Analysis of interatomic Contacts of Structural Units in PDB entry:
8HK1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HK1 entry

There are 21 chains in PDB entry 8HK1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
G 12 C 184
1
GLU 490LEU 1304
2
ASN 458GLU 712
3
MET 1PHE 1217
4
GLN 11ASP 181
5
THR 6ASP 81
6
ASP 7LEU 91
A
SER 160VAL 282
B
VAL 104GLN 209
C
MET 1LEU 501
D
VAL 127ARG 253
E
ASN 68ASN 167
F
VAL 2LYS 163
G
ILE 6LYS 225
a
ARG 19ALA 116
b
SER 2VAL 75
c
MET 14ASN 92
d
LYS 3VAL 76
e
SER 2LYS 84
f
GLY 4PRO 87
g
MET 1ASP 82
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are140 helices in PDB entry 8HK1. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
1
491 499Right-handed alpha
Helix 2
AA2
1
499 506Right-handed alpha
Helix 3
AA3
1
508 527Right-handed alpha
Helix 4
AA4
1
527 540Right-handed alpha
Helix 5
AA5
1
545 562Right-handed alpha
Helix 6
AA6
1
567 569Right-handed 310
Helix 7
AA7
1
570 579Right-handed alpha
Helix 8
AA8
1
586 604Right-handed alpha
Helix 9
AA9
1
605 614Right-handed alpha
Helix 10
AB1
1
615 618Right-handed 310
Helix 11
AB2
1
621 640Right-handed alpha
Helix 12
AB3
1
644 652Right-handed alpha
Helix 13
AB4
1
657 676Right-handed alpha
Helix 14
AB5
1
677 681Right-handed 310
Helix 15
AB6
1
682 691Right-handed alpha
Helix 16
AB7
1
692 696Right-handed 310
Helix 17
AB8
1
698 717Right-handed alpha
Helix 18
AB9
1
727 738Right-handed alpha
Helix 19
AC1
1
740 754Right-handed alpha
Helix 20
AC2
1
755 757Right-handed 310
Helix 21
AC3
1
758 777Right-handed alpha
Helix 22
AC4
1
781 796Right-handed alpha
Helix 23
AC5
1
802 810Right-handed alpha
Helix 24
AC6
1
810 818Right-handed alpha
Helix 25
AC7
1
820 826Right-handed alpha
Helix 26
AC8
1
829 845Right-handed alpha
Helix 27
AC9
1
845 855Right-handed alpha
Helix 28
AD1
1
861 879Right-handed alpha
Helix 29
AD2
1
885 902Right-handed alpha
Helix 30
AD3
1
907 922Right-handed alpha
Helix 31
AD4
1
923 925Right-handed 310
Helix 32
AD5
1
927 942Right-handed alpha
Helix 33
AD6
1
945 965Right-handed alpha
Helix 34
AD7
1
968 981Right-handed alpha
Helix 35
AD8
1
986 1004Right-handed alpha
Helix 36
AD9
1
1012 1021Right-handed alpha
Helix 37
AE1
1
1022 1026Right-handed 310
Helix 38
AE2
1
1028 1046Right-handed alpha
Helix 39
AE3
1
1047 1050Right-handed 310
Helix 40
AE4
1
1051 1063Right-handed alpha
Helix 41
AE5
1
1064 1068Right-handed 310
Helix 42
AE6
1
1070 1089Right-handed alpha
Helix 43
AE7
1
1089 1103Right-handed alpha
Helix 44
AE8
1
1105 1123Right-handed alpha
Helix 45
AE9
1
1124 1127Right-handed 310
Helix 46
AF1
1
1128 1136Right-handed alpha
Helix 47
AF2
1
1143 1159Right-handed alpha
Helix 48
AF3
1
1160 1164Right-handed 310
Helix 49
AF4
1
1165 1178Right-handed alpha
Helix 50
AF5
1
1181 1199Right-handed alpha
Helix 51
AF6
1
1204 1216Right-handed alpha
Helix 52
AF7
1
1217 1221Right-handed 310
Helix 53
AF8
1
1223 1241Right-handed alpha
Helix 54
AF9
1
1242 1251Right-handed alpha
Helix 55
AG1
1
1252 1254Right-handed 310
Helix 56
AG2
1
1258 1275Right-handed alpha
Helix 57
AG3
1
1278 1283Right-handed 310
Helix 58
AG4
1
1298 1302Right-handed 310
Helix 59
AG5
2
461 469Right-handed alpha
Helix 60
AG6
2
471 475Right-handed 310
Helix 61
AG7
2
476 482Right-handed 310
Helix 62
AG8
2
484 493Right-handed alpha
Helix 63
AG9
2
525 530Right-handed alpha
Helix 64
AH1
2
568 578Right-handed alpha
Helix 65
AH2
2
610 618Right-handed alpha
Helix 66
AH3
2
632 640Right-handed alpha
Helix 67
AH4
3
190 194Right-handed 310
Helix 68
AH5
3
429 432Right-handed 310
Helix 69
AH6
3
808 825Right-handed alpha
Helix 70
AH7
3
838 843Right-handed alpha
Helix 71
AH8
3
848 853Right-handed alpha
Helix 72
AH9
3
1134 1152Right-handed alpha
Helix 73
AI1
3
1159 1164Right-handed alpha
Helix 74
AI2
3
1176 1180Right-handed alpha
Helix 75
AI3
3
1181 1185Right-handed 310
Helix 76
AI4
3
1186 1195Right-handed alpha
Helix 77
AI5
3
1200 1216Right-handed alpha
Helix 78
AI6
4
25 33Right-handed alpha
Helix 79
AI7
4
63 74Right-handed alpha
Helix 80
AI8
4
112 121Right-handed alpha
Helix 81
AI9
4
151 161Right-handed alpha
Helix 82
AJ1
5
7 18Right-handed alpha
Helix 83
AJ2
5
27 46Right-handed alpha
Helix 84
AJ3
5
46 57Right-handed alpha
Helix 85
AJ4
5
60 73Right-handed alpha
Helix 86
AJ5
6
51 55Right-handed 310
Helix 87
AJ6
6
73 78Right-handed alpha
Helix 88
AJ7
6
79 83Right-handed 310
Helix 89
AJ8
A
161 175Right-handed alpha
Helix 90
AJ9
A
185 190Right-handed alpha
Helix 91
AK1
A
204 218Right-handed alpha
Helix 92
AK2
A
235 272Right-handed alpha
Helix 93
AK3
B
105 109Right-handed alpha
Helix 94
AK4
C
5 28Right-handed alpha
Helix 95
AK5
C
32 59Right-handed alpha
Helix 96
AK6
C
63 72Right-handed alpha
Helix 97
AK7
C
77 88Right-handed alpha
Helix 98
AK8
C
102 109Right-handed alpha
Helix 99
AK9
C
125 129Right-handed 310
Helix 100
AL1
C
142 154Right-handed alpha
Helix 101
AL2
C
159 168Right-handed alpha
Helix 102
AL3
C
181 201Right-handed alpha
Helix 103
AL4
C
205 220Right-handed alpha
Helix 104
AL5
C
221 224Right-handed 310
Helix 105
AL6
C
293 302Right-handed alpha
Helix 106
AL7
C
303 308Right-handed alpha
Helix 107
AL8
C
317 334Right-handed alpha
Helix 108
AL9
C
334 351Right-handed alpha
Helix 109
AM1
C
352 362Right-handed alpha
Helix 110
AM2
C
394 400Right-handed alpha
Helix 111
AM3
C
418 425Right-handed alpha
Helix 112
AM4
C
428 439Right-handed alpha
Helix 113
AM5
C
443 447Right-handed 310
Helix 114
AM6
C
451 470Right-handed alpha
Helix 115
AM7
C
494 501Right-handed alpha
Helix 116
AM8
D
145 155Right-handed alpha
Helix 117
AM9
D
190 202Right-handed alpha
Helix 118
AN1
D
236 246Right-handed alpha
Helix 119
AN2
E
70 77Right-handed alpha
Helix 120
AN3
E
115 137Right-handed alpha
Helix 121
AN4
E
148 153Right-handed alpha
Helix 122
AN5
E
155 167Right-handed alpha
Helix 123
AN6
F
5 11Right-handed alpha
Helix 124
AN7
F
36 40Right-handed 310
Helix 125
AN8
F
82 87Right-handed alpha
Helix 126
AN9
F
102 112Right-handed 310
Helix 127
AO1
F
130 139Right-handed alpha
Helix 128
AO2
F
151 161Right-handed alpha
Helix 129
AO3
G
22 35Right-handed alpha
Helix 130
AO4
G
61 72Right-handed alpha
Helix 131
AO5
G
91 99Right-handed alpha
Helix 132
AO6
G
163 172Right-handed alpha
Helix 133
AO7
G
196 207Right-handed alpha
Helix 134
AO8
a
20 27Right-handed alpha
Helix 135
AO9
a
28 38Right-handed alpha
Helix 136
AP1
b
6 14Right-handed alpha
Helix 137
AP2
c
16 28Right-handed alpha
Helix 138
AP3
e
4 13Right-handed alpha
Helix 139
AP4
g
2 9Right-handed alpha
Helix 140
AP5
g
75 80Right-handed alpha
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There are 41 sheets in PDB entry 8HK1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
2
648 649first strand
Strand 2
2
689 690anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
1101 1108first strand
Strand 2
3
1115 1121anti-parallel
Strand 3
3
1126 1131anti-parallel
Strand 4
3
3 9anti-parallel
Strand 5
3
1173 1175parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
16 20first strand
Strand 2
3
29 33anti-parallel
Strand 3
3
37 43anti-parallel
Strand 4
3
50 57anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
62 68first strand
Strand 2
3
77 82anti-parallel
Strand 3
3
86 93anti-parallel
Strand 4
3
98 106anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
120 123first strand
Strand 2
3
129 133anti-parallel
Strand 3
3
139 146anti-parallel
Strand 4
3
152 154anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
120 123first strand
Strand 2
3
129 133anti-parallel
Strand 3
3
139 146anti-parallel
Strand 4
3
158 159anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
165 173first strand
Strand 2
3
181 188anti-parallel
Strand 3
3
207 214anti-parallel
Strand 4
3
219 227anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
232 237first strand
Strand 2
3
248 252anti-parallel
Strand 3
3
255 259anti-parallel
Strand 4
3
267 270anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
273 274first strand
Strand 2
3
386 387parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
287 294first strand
Strand 2
3
299 305anti-parallel
Strand 3
3
309 317anti-parallel
Strand 4
3
322 332anti-parallel
Strand 5
3
373 374anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
336 342first strand
Strand 2
3
346 351anti-parallel
Strand 3
3
356 361anti-parallel
Strand 4
3
395 401anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
407 413first strand
Strand 2
3
422 427anti-parallel
Strand 3
3
434 440anti-parallel
Strand 4
3
774 780anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
444 449first strand
Strand 2
3
763 767anti-parallel
Strand 3
3
753 756anti-parallel
Strand 4
3
744 745anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
461 462first strand
Strand 2
3
473 477anti-parallel
Strand 3
3
482 485anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
507 510first strand
Strand 2
3
516 520anti-parallel
Strand 3
3
523 527anti-parallel
Strand 4
3
533 537anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
546 548first strand
Strand 2
3
555 557anti-parallel
Strand 3
3
563 568anti-parallel
Strand 4
3
574 576anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
587 592first strand
Strand 2
3
605 609anti-parallel
Strand 3
3
613 617anti-parallel
Strand 4
3
627 632anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
637 643first strand
Strand 2
3
664 669anti-parallel
Strand 3
3
673 678anti-parallel
Strand 4
3
689 690anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
700 706first strand
Strand 2
3
709 715anti-parallel
Strand 3
3
719 723anti-parallel
Strand 4
3
730 733anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
785 790first strand
Strand 2
3
797 804anti-parallel
Strand 3
3
862 869anti-parallel
Strand 4
3
876 881anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
886 894first strand
Strand 2
3
904 911anti-parallel
Strand 3
3
922 928anti-parallel
Strand 4
3
939 945anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
953 955first strand
Strand 2
3
958 963anti-parallel
Strand 3
3
966 972anti-parallel
Strand 4
3
977 983anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
990 996first strand
Strand 2
3
999 1004anti-parallel
Strand 3
3
1009 1015anti-parallel
Strand 4
3
1020 1026anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
1033 1038first strand
Strand 2
3
1043 1048anti-parallel
Strand 3
3
1052 1057anti-parallel
Strand 4
3
1090 1096anti-parallel
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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
4
39 43first strand
Strand 2
4
56 61anti-parallel
Strand 3
4
14 18anti-parallel
Strand 4
4
82 88anti-parallel
Strand 5
4
77 79anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
4
131 132first strand
Strand 2
4
144 147anti-parallel
Strand 3
4
102 105anti-parallel
Strand 4
4
173 176anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
6
9 10first strand
Strand 2
6
88 89anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
6
18 19first strand
Strand 2
6
44 45anti-parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
6
21 22first strand
Strand 2
6
67 68anti-parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
6
39 42first strand
Strand 2
6
70 72anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
118 121first strand
Strand 2
B
134 137anti-parallel
Strand 3
B
205 208anti-parallel
Strand 4
B
197 200anti-parallel
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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
148 153first strand
Strand 2
B
167 172anti-parallel
Strand 3
B
179 183anti-parallel
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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
282 283first strand
Strand 2
C
290 291anti-parallel
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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
406 408first strand
Strand 2
C
414 416anti-parallel
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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
170 174first strand
Strand 2
D
180 187anti-parallel
Strand 3
D
134 138anti-parallel
Strand 4
D
212 215anti-parallel
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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
13 16first strand
Strand 2
F
22 25anti-parallel
Strand 3
F
46 48parallel
Strand 4
F
68 70parallel
Strand 5
F
92 94parallel
Strand 6
F
117 119parallel
Strand 7
F
144 145parallel
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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
56 57first strand
Strand 2
F
78 79parallel
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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
40 45first strand
Strand 2
G
55 59anti-parallel
Strand 3
G
11 15anti-parallel
Strand 4
G
83 86anti-parallel
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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
76 77first strand
Strand 2
G
80 81anti-parallel
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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
177 181first strand
Strand 2
G
189 194anti-parallel
Strand 3
G
152 156anti-parallel
Strand 4
G
219 222anti-parallel
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There are 37 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
e
56 57first strand
Strand 2
e
41 49anti-parallel
Strand 3
e
60 63anti-parallel
Strand 4
d
67 72anti-parallel
Strand 5
d
16 21anti-parallel
Strand 6
d
25 31anti-parallel
Strand 7
d
40 48anti-parallel
Strand 8
d
54 62anti-parallel
Strand 9
c
84 89anti-parallel
Strand 10
c
30 35anti-parallel
Strand 11
c
38 47anti-parallel
Strand 12
c
56 65anti-parallel
Strand 13
c
70 79anti-parallel
Strand 14
b
69 74anti-parallel
Strand 15
b
18 23anti-parallel
Strand 16
b
27 36anti-parallel
Strand 17
b
42 51anti-parallel
Strand 18
b
54 64anti-parallel
Strand 19
a
106 111anti-parallel
Strand 20
a
41 46anti-parallel
Strand 21
a
51 58anti-parallel
Strand 22
a
65 76anti-parallel
Strand 23
a
90 101anti-parallel
Strand 24
g
65 70anti-parallel
Strand 25
g
13 19anti-parallel
Strand 26
g
24 31anti-parallel
Strand 27
g
38 46anti-parallel
Strand 28
g
53 60anti-parallel
Strand 29
f
77 82anti-parallel
Strand 30
f
15 21anti-parallel
Strand 31
f
26 31anti-parallel
Strand 32
f
40 48anti-parallel
Strand 33
f
65 72anti-parallel
Strand 34
e
68 73anti-parallel
Strand 35
e
17 22anti-parallel
Strand 36
e
27 35anti-parallel
Strand 37
e
41 49anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il