Analysis of interatomic Contacts of Structural Units in PDB entry:
8HK2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HK2 entry

There are 6 chains in PDB entry 8HK2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 18	LEU 454
B	THR 4	PHE 354
C	SER 2	ASN 340
D	SER 1	ARG 77
G	ASN 5	GLU 63
H	VAL 2	LEU 247

There are 29 helices in PDB entry 8HK2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	51	Right-handed alpha
Helix 2	AA2	A	55	84	Right-handed alpha
Helix 3	AA3	A	93	126	Right-handed alpha
Helix 4	AA4	A	126	134	Right-handed alpha
Helix 5	AA5	A	135	154	Right-handed alpha
Helix 6	AA6	A	154	161	Right-handed alpha
Helix 7	AA7	A	332	345	Right-handed alpha
Helix 8	AA8	A	345	365	Right-handed alpha
Helix 9	AA9	A	373	402	Right-handed alpha
Helix 10	AB1	A	407	436	Right-handed alpha
Helix 11	AB2	A	439	454	Right-handed alpha
Helix 12	AB3	B	6	32	Right-handed alpha
Helix 13	AB4	B	45	55	Right-handed alpha
Helix 14	AB5	B	207	216	Right-handed 310
Helix 15	AB6	B	241	255	Right-handed alpha
Helix 16	AB7	B	256	260	Right-handed 310
Helix 17	AB8	B	270	281	Right-handed alpha
Helix 18	AB9	B	282	286	Right-handed 310
Helix 19	AC1	B	295	309	Right-handed alpha
Helix 20	AC2	B	327	352	Right-handed alpha
Helix 21	AC3	C	3	26	Right-handed alpha
Helix 22	AC4	C	29	35	Right-handed alpha
Helix 23	AC5	D	2	13	Right-handed alpha
Helix 24	AC6	D	19	27	Right-handed alpha
Helix 25	AC7	D	36	41	Right-handed 310
Helix 26	AC8	D	49	73	Right-handed alpha
Helix 27	AC9	G	6	24	Right-handed alpha
Helix 28	AD1	G	29	44	Right-handed alpha
Helix 29	AD2	H	220	224	Right-handed 310

There are 14 sheets in PDB entry 8HK2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	166	first strand
Strand 2	A	169	173	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	190	first strand
Strand 2	B	195	200	anti-parallel
Strand 3	B	34	39	parallel
Strand 4	B	220	226	parallel
Strand 5	B	263	269	parallel
Strand 6	B	319	323	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	51	first strand
Strand 2	C	336	339	anti-parallel
Strand 3	C	327	331	anti-parallel
Strand 4	C	315	320	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	89	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	105	first strand
Strand 2	C	111	116	anti-parallel
Strand 3	C	122	125	anti-parallel
Strand 4	C	134	137	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	151	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	166	170	anti-parallel
Strand 4	C	178	180	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	192	first strand
Strand 2	C	198	203	anti-parallel
Strand 3	C	208	212	anti-parallel
Strand 4	C	218	222	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	234	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	250	254	anti-parallel
Strand 4	C	260	264	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	278	first strand
Strand 2	C	284	288	anti-parallel
Strand 3	C	294	298	anti-parallel
Strand 4	C	304	308	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	93	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	59	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	93	99	anti-parallel
Strand 4	H	110	111	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	140	142	first strand
Strand 2	H	155	161	anti-parallel
Strand 3	H	211	216	anti-parallel
Strand 4	H	203	207	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	148	first strand
Strand 2	H	243	246	parallel
Strand 3	H	226	231	anti-parallel
Strand 4	H	174	179	anti-parallel
Strand 5	H	185	190	anti-parallel
Strand 6	H	194	195	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HK2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HK2