Analysis of interatomic Contacts of Structural Units in PDB entry:
8HK7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HK7 entry

There are 4 chains in PDB entry 8HK7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 215	LYS 688
B	LYS 215	LYS 688
C	LYS 215	LYS 688
D	LYS 215	LYS 688

There are 85 helices in PDB entry 8HK7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	215	242	Right-handed alpha
Helix 2	AA2	A	246	259	Right-handed alpha
Helix 3	AA3	A	275	284	Right-handed alpha
Helix 4	AA4	A	285	290	Right-handed alpha
Helix 5	AA5	A	308	312	Right-handed 310
Helix 6	AA6	A	335	339	Right-handed 310
Helix 7	AA7	A	363	367	Right-handed 310
Helix 8	AA8	A	398	412	Right-handed alpha
Helix 9	AA9	A	467	495	Right-handed alpha
Helix 10	AB1	A	506	528	Right-handed alpha
Helix 11	AB2	A	532	537	Right-handed alpha
Helix 12	AB3	A	538	541	Right-handed 310
Helix 13	AB4	A	548	572	Right-handed alpha
Helix 14	AB5	A	573	578	Right-handed alpha
Helix 15	AB6	A	579	585	Right-handed 310
Helix 16	AB7	A	596	601	Right-handed alpha
Helix 17	AB8	A	601	619	Right-handed alpha
Helix 18	AB9	A	623	628	Right-handed 310
Helix 19	AC1	A	629	642	Right-handed alpha
Helix 20	AC2	A	645	653	Right-handed alpha
Helix 21	AC3	A	655	687	Right-handed alpha
Helix 22	AC4	B	216	242	Right-handed alpha
Helix 23	AC5	B	246	259	Right-handed alpha
Helix 24	AC6	B	275	284	Right-handed alpha
Helix 25	AC7	B	285	290	Right-handed alpha
Helix 26	AC8	B	308	312	Right-handed 310
Helix 27	AC9	B	335	339	Right-handed 310
Helix 28	AD1	B	363	367	Right-handed 310
Helix 29	AD2	B	398	412	Right-handed alpha
Helix 30	AD3	B	467	494	Right-handed alpha
Helix 31	AD4	B	506	528	Right-handed alpha
Helix 32	AD5	B	532	537	Right-handed alpha
Helix 33	AD6	B	538	541	Right-handed 310
Helix 34	AD7	B	548	572	Right-handed alpha
Helix 35	AD8	B	573	578	Right-handed alpha
Helix 36	AD9	B	579	581	Right-handed 310
Helix 37	AE1	B	582	591	Right-handed alpha
Helix 38	AE2	B	596	601	Right-handed alpha
Helix 39	AE3	B	601	619	Right-handed alpha
Helix 40	AE4	B	623	628	Right-handed 310
Helix 41	AE5	B	629	642	Right-handed alpha
Helix 42	AE6	B	645	653	Right-handed alpha
Helix 43	AE7	B	655	687	Right-handed alpha
Helix 44	AE8	C	216	242	Right-handed alpha
Helix 45	AE9	C	246	259	Right-handed alpha
Helix 46	AF1	C	275	284	Right-handed alpha
Helix 47	AF2	C	285	290	Right-handed alpha
Helix 48	AF3	C	308	312	Right-handed 310
Helix 49	AF4	C	335	339	Right-handed 310
Helix 50	AF5	C	363	367	Right-handed 310
Helix 51	AF6	C	398	412	Right-handed alpha
Helix 52	AF7	C	467	494	Right-handed alpha
Helix 53	AF8	C	506	530	Right-handed alpha
Helix 54	AF9	C	532	537	Right-handed alpha
Helix 55	AG1	C	538	541	Right-handed 310
Helix 56	AG2	C	548	572	Right-handed alpha
Helix 57	AG3	C	573	578	Right-handed alpha
Helix 58	AG4	C	579	584	Right-handed 310
Helix 59	AG5	C	585	591	Right-handed alpha
Helix 60	AG6	C	596	601	Right-handed alpha
Helix 61	AG7	C	601	619	Right-handed alpha
Helix 62	AG8	C	623	628	Right-handed 310
Helix 63	AG9	C	629	642	Right-handed alpha
Helix 64	AH1	C	645	653	Right-handed alpha
Helix 65	AH2	C	655	687	Right-handed alpha
Helix 66	AH3	D	216	242	Right-handed alpha
Helix 67	AH4	D	246	259	Right-handed alpha
Helix 68	AH5	D	275	284	Right-handed alpha
Helix 69	AH6	D	285	290	Right-handed alpha
Helix 70	AH7	D	308	312	Right-handed 310
Helix 71	AH8	D	335	339	Right-handed 310
Helix 72	AH9	D	363	367	Right-handed 310
Helix 73	AI1	D	398	412	Right-handed alpha
Helix 74	AI2	D	467	494	Right-handed alpha
Helix 75	AI3	D	506	528	Right-handed alpha
Helix 76	AI4	D	532	537	Right-handed alpha
Helix 77	AI5	D	538	541	Right-handed 310
Helix 78	AI6	D	548	572	Right-handed alpha
Helix 79	AI7	D	573	578	Right-handed alpha
Helix 80	AI8	D	586	592	Right-handed alpha
Helix 81	AI9	D	601	619	Right-handed alpha
Helix 82	AJ1	D	623	628	Right-handed 310
Helix 83	AJ2	D	629	642	Right-handed alpha
Helix 84	AJ3	D	645	653	Right-handed alpha
Helix 85	AJ4	D	655	687	Right-handed alpha

There are 12 sheets in PDB entry 8HK7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	394	first strand
Strand 2	A	320	325	anti-parallel
Strand 3	A	419	430	anti-parallel
Strand 4	A	435	444	anti-parallel
Strand 5	A	452	454	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	394	first strand
Strand 2	A	320	325	anti-parallel
Strand 3	A	419	430	anti-parallel
Strand 4	A	435	444	anti-parallel
Strand 5	A	458	460	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	380	first strand
Strand 2	A	385	386	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	394	first strand
Strand 2	B	320	325	anti-parallel
Strand 3	B	419	430	anti-parallel
Strand 4	B	435	444	anti-parallel
Strand 5	B	452	454	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	394	first strand
Strand 2	B	320	325	anti-parallel
Strand 3	B	419	430	anti-parallel
Strand 4	B	435	444	anti-parallel
Strand 5	B	457	460	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	380	first strand
Strand 2	B	385	386	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	394	first strand
Strand 2	C	320	325	anti-parallel
Strand 3	C	419	430	anti-parallel
Strand 4	C	435	444	anti-parallel
Strand 5	C	452	454	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	394	first strand
Strand 2	C	320	325	anti-parallel
Strand 3	C	419	430	anti-parallel
Strand 4	C	435	444	anti-parallel
Strand 5	C	457	460	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	380	first strand
Strand 2	C	385	386	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	391	394	first strand
Strand 2	D	320	325	anti-parallel
Strand 3	D	419	430	anti-parallel
Strand 4	D	435	444	anti-parallel
Strand 5	D	452	454	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	391	394	first strand
Strand 2	D	320	325	anti-parallel
Strand 3	D	419	430	anti-parallel
Strand 4	D	435	444	anti-parallel
Strand 5	D	457	460	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	380	first strand
Strand 2	D	385	386	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HK7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HK7