Analysis of interatomic Contacts of Structural Units in PDB entry:
8HK9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HK9 entry

There are 2 chains in PDB entry 8HK9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 GLN 29VAL 319
A
 GLN 29VAL 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8HK9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
41 53Right-handed alpha
Helix 2
AA2
D
54 58Right-handed 310
Helix 3
AA3
D
69 71Right-handed 310
Helix 4
AA4
D
72 82Right-handed alpha
Helix 5
AA5
D
94 99Right-handed alpha
Helix 6
AA6
D
100 103Right-handed 310
Helix 7
AA7
D
110 114Right-handed 310
Helix 8
AA8
D
137 148Right-handed alpha
Helix 9
AA9
D
161 175Right-handed alpha
Helix 10
AB1
D
185 196Right-handed alpha
Helix 11
AB2
D
205 214Right-handed alpha
Helix 12
AB3
D
237 241Right-handed 310
Helix 13
AB4
D
260 276Right-handed alpha
Helix 14
AB5
D
277 286Right-handed alpha
Helix 15
AB6
D
295 316Right-handed alpha
Helix 16
AB7
A
41 54Right-handed alpha
Helix 17
AB8
A
55 58Right-handed 310
Helix 18
AB9
A
69 71Right-handed 310
Helix 19
AC1
A
72 81Right-handed alpha
Helix 20
AC2
A
94 99Right-handed alpha
Helix 21
AC3
A
99 104Right-handed alpha
Helix 22
AC4
A
110 114Right-handed 310
Helix 23
AC5
A
137 147Right-handed alpha
Helix 24
AC6
A
161 175Right-handed alpha
Helix 25
AC7
A
185 195Right-handed alpha
Helix 26
AC8
A
205 214Right-handed alpha
Helix 27
AC9
A
237 241Right-handed 310
Helix 28
AD1
A
260 275Right-handed alpha
Helix 29
AD2
A
277 287Right-handed alpha
Helix 30
AD3
A
295 317Right-handed alpha
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There are 4 sheets in PDB entry 8HK9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 66first strand
Strand 2
D
31 35parallel
Strand 3
D
88 92parallel
Strand 4
D
248 255anti-parallel
Strand 5
D
115 129anti-parallel
Strand 6
D
218 223anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
179 182first strand
Strand 2
D
153 156parallel
Strand 3
D
200 204parallel
Strand 4
D
115 129anti-parallel
Strand 5
D
290 291anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
31 35parallel
Strand 3
A
88 92parallel
Strand 4
A
248 255anti-parallel
Strand 5
A
115 129anti-parallel
Strand 6
A
218 222anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 182first strand
Strand 2
A
153 156parallel
Strand 3
A
200 204parallel
Strand 4
A
115 129anti-parallel
Strand 5
A
290 291anti-parallel
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