Analysis of interatomic Contacts of Structural Units in PDB entry:
8HKE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HKE entry

There are 4 chains in PDB entry 8HKE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 34	PHE 776
A	SER 34	PHE 776
C	G 8	G 44
D	C 7	C 43

There are 51 helices in PDB entry 8HKE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	80	85	Right-handed 310
Helix 2	AA2	B	127	131	Right-handed 310
Helix 3	AA3	B	205	210	Right-handed alpha
Helix 4	AA4	B	244	248	Right-handed 310
Helix 5	AA5	B	264	272	Right-handed alpha
Helix 6	AA6	B	314	323	Right-handed alpha
Helix 7	AA7	B	327	332	Right-handed 310
Helix 8	AA8	B	335	344	Right-handed alpha
Helix 9	AA9	B	426	433	Right-handed alpha
Helix 10	AB1	B	438	443	Right-handed alpha
Helix 11	AB2	B	444	454	Right-handed alpha
Helix 12	AB3	B	459	464	Right-handed alpha
Helix 13	AB4	B	483	485	Right-handed 310
Helix 14	AB5	B	486	502	Right-handed alpha
Helix 15	AB6	B	520	531	Right-handed alpha
Helix 16	AB7	B	531	540	Right-handed alpha
Helix 17	AB8	B	552	569	Right-handed alpha
Helix 18	AB9	B	575	577	Right-handed 310
Helix 19	AC1	B	578	596	Right-handed alpha
Helix 20	AC2	B	601	626	Right-handed alpha
Helix 21	AC3	B	635	652	Right-handed alpha
Helix 22	AC4	B	659	684	Right-handed alpha
Helix 23	AC5	B	689	709	Right-handed alpha
Helix 24	AC6	B	710	713	Right-handed 310
Helix 25	AC7	B	722	727	Right-handed alpha
Helix 26	AC8	B	738	761	Right-handed alpha
Helix 27	AC9	B	762	768	Right-handed 310
Helix 28	AD1	A	64	68	Right-handed 310
Helix 29	AD2	A	80	85	Right-handed 310
Helix 30	AD3	A	128	132	Right-handed 310
Helix 31	AD4	A	207	210	Right-handed 310
Helix 32	AD5	A	264	272	Right-handed alpha
Helix 33	AD6	A	314	325	Right-handed alpha
Helix 34	AD7	A	327	332	Right-handed 310
Helix 35	AD8	A	335	340	Right-handed alpha
Helix 36	AD9	A	341	344	Right-handed 310
Helix 37	AE1	A	426	433	Right-handed alpha
Helix 38	AE2	A	438	454	Right-handed alpha
Helix 39	AE3	A	458	464	Right-handed alpha
Helix 40	AE4	A	480	485	Right-handed alpha
Helix 41	AE5	A	486	493	Right-handed alpha
Helix 42	AE6	A	495	503	Right-handed alpha
Helix 43	AE7	A	518	540	Right-handed alpha
Helix 44	AE8	A	552	569	Right-handed alpha
Helix 45	AE9	A	577	596	Right-handed alpha
Helix 46	AF1	A	601	626	Right-handed alpha
Helix 47	AF2	A	631	652	Right-handed alpha
Helix 48	AF3	A	657	684	Right-handed alpha
Helix 49	AF4	A	689	711	Right-handed alpha
Helix 50	AF5	A	720	726	Right-handed alpha
Helix 51	AF6	A	739	759	Right-handed alpha

There are 11 sheets in PDB entry 8HKE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	56	60	parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	92	97	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	161	170	anti-parallel
Strand 3	B	71	77	anti-parallel
Strand 4	B	118	119	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	193	first strand
Strand 2	B	301	307	anti-parallel
Strand 3	B	214	217	anti-parallel
Strand 4	B	260	263	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	204	first strand
Strand 2	B	274	279	anti-parallel
Strand 3	B	227	232	anti-parallel
Strand 4	B	251	252	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	57	62	parallel
Strand 3	A	148	152	anti-parallel
Strand 4	A	95	97	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	51	first strand
Strand 2	A	161	165	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	71	75	anti-parallel
Strand 3	A	168	170	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	A	115	116	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	187	first strand
Strand 2	A	306	309	anti-parallel
Strand 3	A	213	215	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	201	first strand
Strand 2	A	273	280	anti-parallel
Strand 3	A	204	205	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	201	first strand
Strand 2	A	273	280	anti-parallel
Strand 3	A	226	232	anti-parallel
Strand 4	A	251	255	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HKE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HKE