Analysis of interatomic Contacts of Structural Units in PDB entry:
8HKF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HKF entry

There are 4 chains in PDB entry 8HKF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 110	ALA 1205
B	ARG 110	ALA 1205
C	ARG 110	ALA 1205
D	ARG 110	ALA 1205

There are164 helices in PDB entry 8HKF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	110	137	Right-handed alpha
Helix 2	AA2	A	164	169	Right-handed alpha
Helix 3	AA3	A	173	198	Right-handed alpha
Helix 4	AA4	A	211	228	Right-handed alpha
Helix 5	AA5	A	229	232	Right-handed 310
Helix 6	AA6	A	237	239	Right-handed 310
Helix 7	AA7	A	240	256	Right-handed alpha
Helix 8	AA8	A	267	293	Right-handed alpha
Helix 9	AA9	A	300	313	Right-handed alpha
Helix 10	AB1	A	324	357	Right-handed alpha
Helix 11	AB2	A	382	394	Right-handed alpha
Helix 12	AB3	A	413	422	Right-handed alpha
Helix 13	AB4	A	422	427	Right-handed alpha
Helix 14	AB5	A	438	445	Right-handed alpha
Helix 15	AB6	A	446	450	Right-handed 310
Helix 16	AB7	A	463	482	Right-handed alpha
Helix 17	AB8	A	493	500	Right-handed 310
Helix 18	AB9	A	509	523	Right-handed alpha
Helix 19	AC1	A	525	534	Right-handed alpha
Helix 20	AC2	A	547	557	Right-handed alpha
Helix 21	AC3	A	572	576	Right-handed 310
Helix 22	AC4	A	579	592	Right-handed alpha
Helix 23	AC5	A	633	644	Right-handed alpha
Helix 24	AC6	A	792	797	Right-handed alpha
Helix 25	AC7	A	811	822	Right-handed alpha
Helix 26	AC8	A	843	851	Right-handed alpha
Helix 27	AC9	A	865	873	Right-handed alpha
Helix 28	AD1	A	893	897	Right-handed 310
Helix 29	AD2	A	898	912	Right-handed alpha
Helix 30	AD3	A	923	930	Right-handed 310
Helix 31	AD4	A	936	952	Right-handed alpha
Helix 32	AD5	A	957	960	Right-handed 310
Helix 33	AD6	A	961	966	Right-handed alpha
Helix 34	AD7	A	972	982	Right-handed alpha
Helix 35	AD8	A	987	997	Right-handed alpha
Helix 36	AD9	A	1013	1017	Right-handed 310
Helix 37	AE1	A	1021	1033	Right-handed alpha
Helix 38	AE2	A	1129	1143	Right-handed alpha
Helix 39	AE3	A	1144	1161	Right-handed alpha
Helix 40	AE4	B	111	137	Right-handed alpha
Helix 41	AE5	B	138	142	Right-handed 310
Helix 42	AE6	B	164	169	Right-handed alpha
Helix 43	AE7	B	173	198	Right-handed alpha
Helix 44	AE8	B	211	226	Right-handed alpha
Helix 45	AE9	B	227	232	Right-handed 310
Helix 46	AF1	B	237	239	Right-handed 310
Helix 47	AF2	B	240	256	Right-handed alpha
Helix 48	AF3	B	267	293	Right-handed alpha
Helix 49	AF4	B	300	313	Right-handed alpha
Helix 50	AF5	B	324	357	Right-handed alpha
Helix 51	AF6	B	382	394	Right-handed alpha
Helix 52	AF7	B	413	422	Right-handed alpha
Helix 53	AF8	B	422	427	Right-handed alpha
Helix 54	AF9	B	438	445	Right-handed alpha
Helix 55	AG1	B	446	450	Right-handed 310
Helix 56	AG2	B	463	482	Right-handed alpha
Helix 57	AG3	B	493	500	Right-handed 310
Helix 58	AG4	B	509	523	Right-handed alpha
Helix 59	AG5	B	525	534	Right-handed alpha
Helix 60	AG6	B	547	557	Right-handed alpha
Helix 61	AG7	B	572	576	Right-handed 310
Helix 62	AG8	B	579	592	Right-handed alpha
Helix 63	AG9	B	633	644	Right-handed alpha
Helix 64	AH1	B	775	780	Right-handed 310
Helix 65	AH2	B	792	797	Right-handed alpha
Helix 66	AH3	B	811	823	Right-handed alpha
Helix 67	AH4	B	843	851	Right-handed alpha
Helix 68	AH5	B	865	873	Right-handed alpha
Helix 69	AH6	B	893	897	Right-handed 310
Helix 70	AH7	B	898	912	Right-handed alpha
Helix 71	AH8	B	923	930	Right-handed 310
Helix 72	AH9	B	936	952	Right-handed alpha
Helix 73	AI1	B	957	960	Right-handed 310
Helix 74	AI2	B	961	966	Right-handed alpha
Helix 75	AI3	B	972	982	Right-handed alpha
Helix 76	AI4	B	987	997	Right-handed alpha
Helix 77	AI5	B	1013	1017	Right-handed 310
Helix 78	AI6	B	1021	1033	Right-handed alpha
Helix 79	AI7	B	1129	1143	Right-handed alpha
Helix 80	AI8	B	1144	1161	Right-handed alpha
Helix 81	AI9	C	111	137	Right-handed alpha
Helix 82	AJ1	C	164	169	Right-handed alpha
Helix 83	AJ2	C	173	198	Right-handed alpha
Helix 84	AJ3	C	211	218	Right-handed alpha
Helix 85	AJ4	C	219	228	Right-handed alpha
Helix 86	AJ5	C	229	232	Right-handed 310
Helix 87	AJ6	C	237	239	Right-handed 310
Helix 88	AJ7	C	240	256	Right-handed alpha
Helix 89	AJ8	C	267	293	Right-handed alpha
Helix 90	AJ9	C	300	313	Right-handed alpha
Helix 91	AK1	C	324	357	Right-handed alpha
Helix 92	AK2	C	382	394	Right-handed alpha
Helix 93	AK3	C	395	400	Right-handed 310
Helix 94	AK4	C	413	422	Right-handed alpha
Helix 95	AK5	C	422	427	Right-handed alpha
Helix 96	AK6	C	438	445	Right-handed alpha
Helix 97	AK7	C	446	450	Right-handed 310
Helix 98	AK8	C	463	482	Right-handed alpha
Helix 99	AK9	C	493	500	Right-handed 310
Helix 100	AL1	C	509	523	Right-handed alpha
Helix 101	AL2	C	525	534	Right-handed alpha
Helix 102	AL3	C	547	557	Right-handed alpha
Helix 103	AL4	C	572	576	Right-handed 310
Helix 104	AL5	C	579	592	Right-handed alpha
Helix 105	AL6	C	633	644	Right-handed alpha
Helix 106	AL7	C	775	780	Right-handed 310
Helix 107	AL8	C	792	797	Right-handed alpha
Helix 108	AL9	C	811	823	Right-handed alpha
Helix 109	AM1	C	843	851	Right-handed alpha
Helix 110	AM2	C	865	873	Right-handed alpha
Helix 111	AM3	C	893	897	Right-handed 310
Helix 112	AM4	C	898	912	Right-handed alpha
Helix 113	AM5	C	923	930	Right-handed 310
Helix 114	AM6	C	936	952	Right-handed alpha
Helix 115	AM7	C	957	960	Right-handed 310
Helix 116	AM8	C	961	966	Right-handed alpha
Helix 117	AM9	C	972	982	Right-handed alpha
Helix 118	AN1	C	987	997	Right-handed alpha
Helix 119	AN2	C	1013	1017	Right-handed 310
Helix 120	AN3	C	1021	1033	Right-handed alpha
Helix 121	AN4	C	1129	1143	Right-handed alpha
Helix 122	AN5	C	1144	1161	Right-handed alpha
Helix 123	AN6	D	111	137	Right-handed alpha
Helix 124	AN7	D	164	169	Right-handed alpha
Helix 125	AN8	D	173	198	Right-handed alpha
Helix 126	AN9	D	211	225	Right-handed alpha
Helix 127	AO1	D	226	227	Right-handed 310
Helix 128	AO2	D	228	232	Right-handed 310
Helix 129	AO3	D	237	239	Right-handed 310
Helix 130	AO4	D	240	256	Right-handed alpha
Helix 131	AO5	D	267	293	Right-handed alpha
Helix 132	AO6	D	300	313	Right-handed alpha
Helix 133	AO7	D	324	357	Right-handed alpha
Helix 134	AO8	D	382	394	Right-handed alpha
Helix 135	AO9	D	395	400	Right-handed 310
Helix 136	AP1	D	413	422	Right-handed alpha
Helix 137	AP2	D	422	427	Right-handed alpha
Helix 138	AP3	D	438	445	Right-handed alpha
Helix 139	AP4	D	446	450	Right-handed 310
Helix 140	AP5	D	463	482	Right-handed alpha
Helix 141	AP6	D	493	500	Right-handed 310
Helix 142	AP7	D	509	523	Right-handed alpha
Helix 143	AP8	D	525	534	Right-handed alpha
Helix 144	AP9	D	547	557	Right-handed alpha
Helix 145	AQ1	D	572	576	Right-handed 310
Helix 146	AQ2	D	579	592	Right-handed alpha
Helix 147	AQ3	D	633	644	Right-handed alpha
Helix 148	AQ4	D	775	780	Right-handed 310
Helix 149	AQ5	D	792	797	Right-handed alpha
Helix 150	AQ6	D	811	822	Right-handed alpha
Helix 151	AQ7	D	843	851	Right-handed alpha
Helix 152	AQ8	D	865	873	Right-handed alpha
Helix 153	AQ9	D	893	897	Right-handed 310
Helix 154	AR1	D	898	912	Right-handed alpha
Helix 155	AR2	D	923	930	Right-handed 310
Helix 156	AR3	D	936	952	Right-handed alpha
Helix 157	AR4	D	957	960	Right-handed 310
Helix 158	AR5	D	961	966	Right-handed alpha
Helix 159	AR6	D	972	982	Right-handed alpha
Helix 160	AR7	D	987	997	Right-handed alpha
Helix 161	AR8	D	1013	1017	Right-handed 310
Helix 162	AR9	D	1021	1033	Right-handed alpha
Helix 163	AS1	D	1129	1143	Right-handed alpha
Helix 164	AS2	D	1144	1161	Right-handed alpha

There are 20 sheets in PDB entry 8HKF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	433	first strand
Strand 2	A	403	408	parallel
Strand 3	A	373	377	parallel
Strand 4	A	453	456	parallel
Strand 5	A	487	491	parallel
Strand 6	A	505	508	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	565	first strand
Strand 2	A	621	626	anti-parallel
Strand 3	A	594	599	anti-parallel
Strand 4	A	606	608	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	750	752	first strand
Strand 2	A	767	769	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	856	860	first strand
Strand 2	A	834	838	parallel
Strand 3	A	802	807	parallel
Strand 4	A	877	882	parallel
Strand 5	A	916	921	parallel
Strand 6	A	969	971	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1006	1012	first strand
Strand 2	A	1194	1200	anti-parallel
Strand 3	A	1036	1045	anti-parallel
Strand 4	A	1176	1182	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	433	first strand
Strand 2	B	403	408	parallel
Strand 3	B	373	377	parallel
Strand 4	B	453	456	parallel
Strand 5	B	487	491	parallel
Strand 6	B	505	508	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	565	first strand
Strand 2	B	621	626	anti-parallel
Strand 3	B	594	599	anti-parallel
Strand 4	B	606	608	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	750	752	first strand
Strand 2	B	767	769	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	856	860	first strand
Strand 2	B	834	838	parallel
Strand 3	B	802	807	parallel
Strand 4	B	877	882	parallel
Strand 5	B	916	921	parallel
Strand 6	B	969	971	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1006	1012	first strand
Strand 2	B	1194	1200	anti-parallel
Strand 3	B	1036	1045	anti-parallel
Strand 4	B	1176	1182	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	429	433	first strand
Strand 2	C	403	408	parallel
Strand 3	C	373	377	parallel
Strand 4	C	453	456	parallel
Strand 5	C	487	491	parallel
Strand 6	C	505	508	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	560	565	first strand
Strand 2	C	621	626	anti-parallel
Strand 3	C	594	599	anti-parallel
Strand 4	C	606	608	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	750	752	first strand
Strand 2	C	767	769	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	856	860	first strand
Strand 2	C	834	838	parallel
Strand 3	C	802	807	parallel
Strand 4	C	877	882	parallel
Strand 5	C	916	921	parallel
Strand 6	C	969	971	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1006	1012	first strand
Strand 2	C	1194	1200	anti-parallel
Strand 3	C	1036	1045	anti-parallel
Strand 4	C	1176	1182	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	429	433	first strand
Strand 2	D	403	408	parallel
Strand 3	D	373	377	parallel
Strand 4	D	453	456	parallel
Strand 5	D	487	491	parallel
Strand 6	D	505	508	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	560	565	first strand
Strand 2	D	621	626	anti-parallel
Strand 3	D	594	599	anti-parallel
Strand 4	D	606	608	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	750	752	first strand
Strand 2	D	767	769	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	856	860	first strand
Strand 2	D	834	838	parallel
Strand 3	D	802	807	parallel
Strand 4	D	877	882	parallel
Strand 5	D	916	921	parallel
Strand 6	D	969	971	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1006	1012	first strand
Strand 2	D	1194	1200	anti-parallel
Strand 3	D	1036	1045	anti-parallel
Strand 4	D	1176	1182	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HKF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HKF