Analysis of interatomic Contacts of Structural Units in PDB entry:
8HKG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HKG entry

There are 2 chains in PDB entry 8HKG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2PRO 340
B
 GLN 2PRO 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8HKG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
19 25Right-handed alpha
Helix 3
AA3
A
25 36Right-handed alpha
Helix 4
AA4
A
59 72Right-handed alpha
Helix 5
AA5
A
101 121Right-handed alpha
Helix 6
AA6
A
147 154Right-handed alpha
Helix 7
AA7
A
155 169Right-handed alpha
Helix 8
AA8
A
183 200Right-handed alpha
Helix 9
AA9
A
219 232Right-handed alpha
Helix 10
AB1
A
264 285Right-handed alpha
Helix 11
AB2
A
305 309Right-handed 310
Helix 12
AB3
A
320 328Right-handed alpha
Helix 13
AB4
B
3 8Right-handed alpha
Helix 14
AB5
B
19 25Right-handed alpha
Helix 15
AB6
B
25 34Right-handed alpha
Helix 16
AB7
B
59 71Right-handed alpha
Helix 17
AB8
B
94 98Right-handed 310
Helix 18
AB9
B
101 121Right-handed alpha
Helix 19
AC1
B
147 154Right-handed alpha
Helix 20
AC2
B
155 169Right-handed alpha
Helix 21
AC3
B
183 201Right-handed alpha
Helix 22
AC4
B
219 232Right-handed alpha
Helix 23
AC5
B
264 285Right-handed alpha
Helix 24
AC6
B
305 309Right-handed 310
Helix 25
AC7
B
320 328Right-handed alpha
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There are 2 sheets in PDB entry 8HKG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
237 245parallel
Strand 3
A
289 294parallel
Strand 4
A
13 18parallel
Strand 5
A
38 41parallel
Strand 6
A
75 78parallel
Strand 7
A
124 131parallel
Strand 8
A
173 178parallel
Strand 9
A
206 209parallel
Strand 10
A
237 245parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 214first strand
Strand 2
B
237 245parallel
Strand 3
B
289 294parallel
Strand 4
B
13 18parallel
Strand 5
B
38 41parallel
Strand 6
B
75 78parallel
Strand 7
B
124 131parallel
Strand 8
B
173 178parallel
Strand 9
B
206 209parallel
Strand 10
B
237 245parallel
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