Analysis of interatomic Contacts of Structural Units in PDB entry:
8HKQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HKQ entry

There are 4 chains in PDB entry 8HKQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ARG 110	ALA 1205
A	ARG 110	ALA 1205
C	ARG 110	ALA 1205
B	ARG 110	ALA 1205

There are162 helices in PDB entry 8HKQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	110	136	Right-handed alpha
Helix 2	AA2	D	164	169	Right-handed alpha
Helix 3	AA3	D	173	198	Right-handed alpha
Helix 4	AA4	D	211	228	Right-handed alpha
Helix 5	AA5	D	229	232	Right-handed 310
Helix 6	AA6	D	237	239	Right-handed 310
Helix 7	AA7	D	240	256	Right-handed alpha
Helix 8	AA8	D	267	293	Right-handed alpha
Helix 9	AA9	D	300	313	Right-handed alpha
Helix 10	AB1	D	324	357	Right-handed alpha
Helix 11	AB2	D	382	394	Right-handed alpha
Helix 12	AB3	D	396	400	Right-handed 310
Helix 13	AB4	D	413	421	Right-handed alpha
Helix 14	AB5	D	422	427	Right-handed alpha
Helix 15	AB6	D	438	445	Right-handed alpha
Helix 16	AB7	D	446	450	Right-handed 310
Helix 17	AB8	D	463	482	Right-handed alpha
Helix 18	AB9	D	493	499	Right-handed 310
Helix 19	AC1	D	509	523	Right-handed alpha
Helix 20	AC2	D	525	534	Right-handed alpha
Helix 21	AC3	D	547	557	Right-handed alpha
Helix 22	AC4	D	572	576	Right-handed 310
Helix 23	AC5	D	579	591	Right-handed alpha
Helix 24	AC6	D	633	644	Right-handed alpha
Helix 25	AC7	D	792	797	Right-handed alpha
Helix 26	AC8	D	811	822	Right-handed alpha
Helix 27	AC9	D	843	851	Right-handed alpha
Helix 28	AD1	D	865	873	Right-handed alpha
Helix 29	AD2	D	886	891	Right-handed 310
Helix 30	AD3	D	893	897	Right-handed 310
Helix 31	AD4	D	898	912	Right-handed alpha
Helix 32	AD5	D	923	930	Right-handed 310
Helix 33	AD6	D	936	952	Right-handed alpha
Helix 34	AD7	D	957	960	Right-handed 310
Helix 35	AD8	D	961	966	Right-handed alpha
Helix 36	AD9	D	972	982	Right-handed alpha
Helix 37	AE1	D	987	997	Right-handed alpha
Helix 38	AE2	D	1013	1017	Right-handed 310
Helix 39	AE3	D	1021	1033	Right-handed alpha
Helix 40	AE4	D	1130	1143	Right-handed alpha
Helix 41	AE5	D	1144	1161	Right-handed alpha
Helix 42	AE6	A	111	137	Right-handed alpha
Helix 43	AE7	A	164	169	Right-handed alpha
Helix 44	AE8	A	173	198	Right-handed alpha
Helix 45	AE9	A	211	228	Right-handed alpha
Helix 46	AF1	A	229	232	Right-handed 310
Helix 47	AF2	A	237	239	Right-handed 310
Helix 48	AF3	A	240	254	Right-handed alpha
Helix 49	AF4	A	266	293	Right-handed alpha
Helix 50	AF5	A	300	313	Right-handed alpha
Helix 51	AF6	A	324	357	Right-handed alpha
Helix 52	AF7	A	382	394	Right-handed alpha
Helix 53	AF8	A	396	400	Right-handed 310
Helix 54	AF9	A	413	421	Right-handed alpha
Helix 55	AG1	A	422	427	Right-handed alpha
Helix 56	AG2	A	438	445	Right-handed alpha
Helix 57	AG3	A	463	482	Right-handed alpha
Helix 58	AG4	A	493	499	Right-handed 310
Helix 59	AG5	A	509	523	Right-handed alpha
Helix 60	AG6	A	525	534	Right-handed alpha
Helix 61	AG7	A	547	557	Right-handed alpha
Helix 62	AG8	A	572	576	Right-handed 310
Helix 63	AG9	A	579	591	Right-handed alpha
Helix 64	AH1	A	633	644	Right-handed alpha
Helix 65	AH2	A	792	797	Right-handed alpha
Helix 66	AH3	A	811	822	Right-handed alpha
Helix 67	AH4	A	843	851	Right-handed alpha
Helix 68	AH5	A	865	873	Right-handed alpha
Helix 69	AH6	A	886	891	Right-handed 310
Helix 70	AH7	A	893	897	Right-handed 310
Helix 71	AH8	A	898	912	Right-handed alpha
Helix 72	AH9	A	923	930	Right-handed 310
Helix 73	AI1	A	936	952	Right-handed alpha
Helix 74	AI2	A	957	960	Right-handed 310
Helix 75	AI3	A	961	966	Right-handed alpha
Helix 76	AI4	A	972	982	Right-handed alpha
Helix 77	AI5	A	987	997	Right-handed alpha
Helix 78	AI6	A	1013	1017	Right-handed 310
Helix 79	AI7	A	1021	1033	Right-handed alpha
Helix 80	AI8	A	1130	1143	Right-handed alpha
Helix 81	AI9	A	1144	1161	Right-handed alpha
Helix 82	AJ1	C	111	136	Right-handed alpha
Helix 83	AJ2	C	164	169	Right-handed alpha
Helix 84	AJ3	C	173	198	Right-handed alpha
Helix 85	AJ4	C	211	228	Right-handed alpha
Helix 86	AJ5	C	229	232	Right-handed 310
Helix 87	AJ6	C	237	239	Right-handed 310
Helix 88	AJ7	C	240	254	Right-handed alpha
Helix 89	AJ8	C	266	293	Right-handed alpha
Helix 90	AJ9	C	300	313	Right-handed alpha
Helix 91	AK1	C	324	357	Right-handed alpha
Helix 92	AK2	C	382	394	Right-handed alpha
Helix 93	AK3	C	396	400	Right-handed 310
Helix 94	AK4	C	413	421	Right-handed alpha
Helix 95	AK5	C	422	427	Right-handed alpha
Helix 96	AK6	C	438	445	Right-handed alpha
Helix 97	AK7	C	463	482	Right-handed alpha
Helix 98	AK8	C	493	499	Right-handed 310
Helix 99	AK9	C	509	523	Right-handed alpha
Helix 100	AL1	C	525	534	Right-handed alpha
Helix 101	AL2	C	547	557	Right-handed alpha
Helix 102	AL3	C	572	576	Right-handed 310
Helix 103	AL4	C	579	591	Right-handed alpha
Helix 104	AL5	C	633	644	Right-handed alpha
Helix 105	AL6	C	792	797	Right-handed alpha
Helix 106	AL7	C	811	822	Right-handed alpha
Helix 107	AL8	C	843	851	Right-handed alpha
Helix 108	AL9	C	865	873	Right-handed alpha
Helix 109	AM1	C	886	891	Right-handed 310
Helix 110	AM2	C	893	897	Right-handed 310
Helix 111	AM3	C	898	912	Right-handed alpha
Helix 112	AM4	C	923	930	Right-handed 310
Helix 113	AM5	C	936	952	Right-handed alpha
Helix 114	AM6	C	957	960	Right-handed 310
Helix 115	AM7	C	961	966	Right-handed alpha
Helix 116	AM8	C	972	982	Right-handed alpha
Helix 117	AM9	C	987	997	Right-handed alpha
Helix 118	AN1	C	1013	1017	Right-handed 310
Helix 119	AN2	C	1021	1033	Right-handed alpha
Helix 120	AN3	C	1130	1143	Right-handed alpha
Helix 121	AN4	C	1144	1161	Right-handed alpha
Helix 122	AN5	B	111	136	Right-handed alpha
Helix 123	AN6	B	164	169	Right-handed alpha
Helix 124	AN7	B	173	198	Right-handed alpha
Helix 125	AN8	B	211	228	Right-handed alpha
Helix 126	AN9	B	229	232	Right-handed 310
Helix 127	AO1	B	237	239	Right-handed 310
Helix 128	AO2	B	240	254	Right-handed alpha
Helix 129	AO3	B	266	293	Right-handed alpha
Helix 130	AO4	B	300	313	Right-handed alpha
Helix 131	AO5	B	324	357	Right-handed alpha
Helix 132	AO6	B	382	394	Right-handed alpha
Helix 133	AO7	B	396	400	Right-handed 310
Helix 134	AO8	B	413	421	Right-handed alpha
Helix 135	AO9	B	422	427	Right-handed alpha
Helix 136	AP1	B	438	445	Right-handed alpha
Helix 137	AP2	B	446	450	Right-handed 310
Helix 138	AP3	B	463	482	Right-handed alpha
Helix 139	AP4	B	493	499	Right-handed 310
Helix 140	AP5	B	509	523	Right-handed alpha
Helix 141	AP6	B	525	534	Right-handed alpha
Helix 142	AP7	B	547	557	Right-handed alpha
Helix 143	AP8	B	572	576	Right-handed 310
Helix 144	AP9	B	579	591	Right-handed alpha
Helix 145	AQ1	B	633	644	Right-handed alpha
Helix 146	AQ2	B	792	797	Right-handed alpha
Helix 147	AQ3	B	811	822	Right-handed alpha
Helix 148	AQ4	B	843	851	Right-handed alpha
Helix 149	AQ5	B	865	873	Right-handed alpha
Helix 150	AQ6	B	886	891	Right-handed 310
Helix 151	AQ7	B	893	897	Right-handed 310
Helix 152	AQ8	B	898	912	Right-handed alpha
Helix 153	AQ9	B	923	930	Right-handed 310
Helix 154	AR1	B	936	952	Right-handed alpha
Helix 155	AR2	B	957	960	Right-handed 310
Helix 156	AR3	B	961	966	Right-handed alpha
Helix 157	AR4	B	972	982	Right-handed alpha
Helix 158	AR5	B	987	997	Right-handed alpha
Helix 159	AR6	B	1013	1017	Right-handed 310
Helix 160	AR7	B	1021	1033	Right-handed alpha
Helix 161	AR8	B	1130	1143	Right-handed alpha
Helix 162	AR9	B	1144	1161	Right-handed alpha

There are 20 sheets in PDB entry 8HKQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	429	433	first strand
Strand 2	D	403	408	parallel
Strand 3	D	373	377	parallel
Strand 4	D	453	455	parallel
Strand 5	D	487	491	parallel
Strand 6	D	505	508	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	560	565	first strand
Strand 2	D	621	626	anti-parallel
Strand 3	D	594	599	anti-parallel
Strand 4	D	606	608	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	750	752	first strand
Strand 2	D	767	769	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	856	860	first strand
Strand 2	D	834	838	parallel
Strand 3	D	802	807	parallel
Strand 4	D	877	882	parallel
Strand 5	D	916	921	parallel
Strand 6	D	969	971	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1006	1012	first strand
Strand 2	D	1194	1200	anti-parallel
Strand 3	D	1036	1045	anti-parallel
Strand 4	D	1176	1182	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	433	first strand
Strand 2	A	403	408	parallel
Strand 3	A	373	377	parallel
Strand 4	A	453	455	parallel
Strand 5	A	487	491	parallel
Strand 6	A	505	508	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	565	first strand
Strand 2	A	621	626	anti-parallel
Strand 3	A	594	599	anti-parallel
Strand 4	A	607	608	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	750	752	first strand
Strand 2	A	767	769	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	856	860	first strand
Strand 2	A	834	838	parallel
Strand 3	A	802	807	parallel
Strand 4	A	877	882	parallel
Strand 5	A	916	921	parallel
Strand 6	A	969	971	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1006	1012	first strand
Strand 2	A	1194	1200	anti-parallel
Strand 3	A	1036	1045	anti-parallel
Strand 4	A	1176	1182	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	429	433	first strand
Strand 2	C	403	408	parallel
Strand 3	C	373	377	parallel
Strand 4	C	453	455	parallel
Strand 5	C	487	491	parallel
Strand 6	C	505	508	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	560	565	first strand
Strand 2	C	621	626	anti-parallel
Strand 3	C	594	599	anti-parallel
Strand 4	C	607	608	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	750	752	first strand
Strand 2	C	767	769	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	856	860	first strand
Strand 2	C	834	838	parallel
Strand 3	C	802	807	parallel
Strand 4	C	877	882	parallel
Strand 5	C	916	921	parallel
Strand 6	C	969	971	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1006	1012	first strand
Strand 2	C	1194	1200	anti-parallel
Strand 3	C	1036	1045	anti-parallel
Strand 4	C	1176	1182	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	433	first strand
Strand 2	B	403	408	parallel
Strand 3	B	373	377	parallel
Strand 4	B	453	455	parallel
Strand 5	B	487	491	parallel
Strand 6	B	505	508	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	565	first strand
Strand 2	B	621	626	anti-parallel
Strand 3	B	594	599	anti-parallel
Strand 4	B	607	608	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	750	752	first strand
Strand 2	B	767	769	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	856	860	first strand
Strand 2	B	834	838	parallel
Strand 3	B	802	807	parallel
Strand 4	B	877	882	parallel
Strand 5	B	916	921	parallel
Strand 6	B	969	971	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1006	1012	first strand
Strand 2	B	1194	1200	anti-parallel
Strand 3	B	1036	1045	anti-parallel
Strand 4	B	1176	1182	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HKQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HKQ