Analysis of interatomic Contacts of Structural Units in PDB entry:
8HKR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HKR entry

There are 2 chains in PDB entry 8HKR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 16ALA 405
B
 TRP 18ALA 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8HKR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 34Right-handed alpha
Helix 2
AA2
A
39 48Right-handed alpha
Helix 3
AA3
A
67 76Right-handed alpha
Helix 4
AA4
A
87 102Right-handed alpha
Helix 5
AA5
A
112 120Right-handed 310
Helix 6
AA6
A
131 135Right-handed 310
Helix 7
AA7
A
137 148Right-handed alpha
Helix 8
AA8
A
162 164Right-handed 310
Helix 9
AA9
A
165 178Right-handed alpha
Helix 10
AB1
A
183 196Right-handed alpha
Helix 11
AB2
A
201 208Right-handed alpha
Helix 12
AB3
A
216 224Right-handed alpha
Helix 13
AB4
A
232 243Right-handed alpha
Helix 14
AB5
A
253 257Right-handed 310
Helix 15
AB6
A
266 275Right-handed alpha
Helix 16
AB7
A
276 288Right-handed alpha
Helix 17
AB8
A
304 308Right-handed 310
Helix 18
AB9
A
314 320Right-handed 310
Helix 19
AC1
A
345 353Right-handed alpha
Helix 20
AC2
A
360 370Right-handed alpha
Helix 21
AC3
A
379 395Right-handed alpha
Helix 22
AC4
B
26 34Right-handed alpha
Helix 23
AC5
B
39 48Right-handed alpha
Helix 24
AC6
B
67 76Right-handed alpha
Helix 25
AC7
B
87 102Right-handed alpha
Helix 26
AC8
B
112 120Right-handed 310
Helix 27
AC9
B
131 135Right-handed 310
Helix 28
AD1
B
137 147Right-handed alpha
Helix 29
AD2
B
162 164Right-handed 310
Helix 30
AD3
B
165 178Right-handed alpha
Helix 31
AD4
B
183 197Right-handed alpha
Helix 32
AD5
B
202 210Right-handed alpha
Helix 33
AD6
B
215 224Right-handed alpha
Helix 34
AD7
B
232 243Right-handed alpha
Helix 35
AD8
B
253 257Right-handed 310
Helix 36
AD9
B
266 273Right-handed alpha
Helix 37
AE1
B
276 288Right-handed alpha
Helix 38
AE2
B
304 308Right-handed 310
Helix 39
AE3
B
314 320Right-handed 310
Helix 40
AE4
B
345 353Right-handed alpha
Helix 41
AE5
B
360 370Right-handed alpha
Helix 42
AE6
B
378 395Right-handed alpha
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There are 6 sheets in PDB entry 8HKR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 110first strand
Strand 2
A
80 85parallel
Strand 3
A
58 62parallel
Strand 4
A
123 129parallel
Strand 5
A
149 160parallel
Strand 6
A
293 300anti-parallel
Strand 7
A
245 250anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 324first strand
Strand 2
A
399 402anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 331first strand
Strand 2
A
334 337anti-parallel
Strand 3
A
340 342anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 110first strand
Strand 2
B
80 85parallel
Strand 3
B
58 62parallel
Strand 4
B
123 129parallel
Strand 5
B
149 160parallel
Strand 6
B
293 300anti-parallel
Strand 7
B
245 250anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 324first strand
Strand 2
B
399 402anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 331first strand
Strand 2
B
334 337anti-parallel
Strand 3
B
340 342anti-parallel
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