Analysis of interatomic Contacts of Structural Units in PDB entry:
8HKS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HKS entry

There are 4 chains in PDB entry 8HKS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 229	GLN 581
B	GLY 229	GLN 581
C	GLY 229	GLN 581
D	GLY 229	GLN 581

There are 68 helices in PDB entry 8HKS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	235	246	Right-handed alpha
Helix 2	AA2	A	247	258	Right-handed alpha
Helix 3	AA3	A	266	270	Right-handed 310
Helix 4	AA4	A	271	291	Right-handed alpha
Helix 5	AA5	A	295	309	Right-handed alpha
Helix 6	AA6	A	323	348	Right-handed alpha
Helix 7	AA7	A	356	366	Right-handed alpha
Helix 8	AA8	A	376	389	Right-handed alpha
Helix 9	AA9	A	411	416	Right-handed alpha
Helix 10	AB1	A	431	433	Right-handed 310
Helix 11	AB2	A	434	442	Right-handed alpha
Helix 12	AB3	A	451	455	Right-handed 310
Helix 13	AB4	A	466	472	Right-handed alpha
Helix 14	AB5	A	473	475	Right-handed 310
Helix 15	AB6	A	504	509	Right-handed 310
Helix 16	AB7	A	525	528	Right-handed 310
Helix 17	AB8	A	563	565	Right-handed 310
Helix 18	AB9	B	235	246	Right-handed alpha
Helix 19	AC1	B	247	258	Right-handed alpha
Helix 20	AC2	B	266	270	Right-handed 310
Helix 21	AC3	B	271	291	Right-handed alpha
Helix 22	AC4	B	295	309	Right-handed alpha
Helix 23	AC5	B	323	348	Right-handed alpha
Helix 24	AC6	B	356	365	Right-handed alpha
Helix 25	AC7	B	376	389	Right-handed alpha
Helix 26	AC8	B	411	416	Right-handed alpha
Helix 27	AC9	B	431	433	Right-handed 310
Helix 28	AD1	B	434	442	Right-handed alpha
Helix 29	AD2	B	451	455	Right-handed 310
Helix 30	AD3	B	466	472	Right-handed alpha
Helix 31	AD4	B	473	475	Right-handed 310
Helix 32	AD5	B	504	509	Right-handed 310
Helix 33	AD6	B	525	528	Right-handed 310
Helix 34	AD7	B	563	565	Right-handed 310
Helix 35	AD8	C	235	246	Right-handed alpha
Helix 36	AD9	C	247	258	Right-handed alpha
Helix 37	AE1	C	266	270	Right-handed 310
Helix 38	AE2	C	271	292	Right-handed alpha
Helix 39	AE3	C	295	309	Right-handed alpha
Helix 40	AE4	C	323	348	Right-handed alpha
Helix 41	AE5	C	356	365	Right-handed alpha
Helix 42	AE6	C	376	389	Right-handed alpha
Helix 43	AE7	C	411	416	Right-handed alpha
Helix 44	AE8	C	431	433	Right-handed 310
Helix 45	AE9	C	434	442	Right-handed alpha
Helix 46	AF1	C	451	455	Right-handed 310
Helix 47	AF2	C	466	472	Right-handed alpha
Helix 48	AF3	C	473	475	Right-handed 310
Helix 49	AF4	C	504	509	Right-handed 310
Helix 50	AF5	C	525	528	Right-handed 310
Helix 51	AF6	C	563	565	Right-handed 310
Helix 52	AF7	D	235	246	Right-handed alpha
Helix 53	AF8	D	247	258	Right-handed alpha
Helix 54	AF9	D	266	270	Right-handed 310
Helix 55	AG1	D	271	291	Right-handed alpha
Helix 56	AG2	D	295	309	Right-handed alpha
Helix 57	AG3	D	323	349	Right-handed alpha
Helix 58	AG4	D	356	365	Right-handed alpha
Helix 59	AG5	D	376	389	Right-handed alpha
Helix 60	AG6	D	411	416	Right-handed alpha
Helix 61	AG7	D	431	433	Right-handed 310
Helix 62	AG8	D	434	442	Right-handed alpha
Helix 63	AG9	D	451	455	Right-handed 310
Helix 64	AH1	D	466	473	Right-handed alpha
Helix 65	AH2	D	504	509	Right-handed 310
Helix 66	AH3	D	525	528	Right-handed 310
Helix 67	AH4	D	545	547	Right-handed 310
Helix 68	AH5	D	563	565	Right-handed 310

There are 16 sheets in PDB entry 8HKS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	371	first strand
Strand 2	A	397	409	anti-parallel
Strand 3	A	567	579	anti-parallel
Strand 4	A	482	491	anti-parallel
Strand 5	A	423	429	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	463	first strand
Strand 2	A	558	561	anti-parallel
Strand 3	A	514	517	anti-parallel
Strand 4	A	495	498	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	543	first strand
Strand 2	A	519	523	anti-parallel
Strand 3	A	554	556	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	531	first strand
Strand 2	A	534	536	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	371	first strand
Strand 2	B	397	409	anti-parallel
Strand 3	B	567	579	anti-parallel
Strand 4	B	482	491	anti-parallel
Strand 5	B	423	429	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	463	first strand
Strand 2	B	558	561	anti-parallel
Strand 3	B	514	517	anti-parallel
Strand 4	B	495	498	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	543	first strand
Strand 2	B	519	523	anti-parallel
Strand 3	B	554	556	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	529	531	first strand
Strand 2	B	534	536	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	371	first strand
Strand 2	C	397	409	anti-parallel
Strand 3	C	567	579	anti-parallel
Strand 4	C	482	491	anti-parallel
Strand 5	C	423	430	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	461	463	first strand
Strand 2	C	558	561	anti-parallel
Strand 3	C	514	517	anti-parallel
Strand 4	C	495	498	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	543	first strand
Strand 2	C	519	523	anti-parallel
Strand 3	C	554	556	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	529	531	first strand
Strand 2	C	534	536	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	367	371	first strand
Strand 2	D	397	409	anti-parallel
Strand 3	D	567	579	anti-parallel
Strand 4	D	482	491	anti-parallel
Strand 5	D	423	429	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	461	463	first strand
Strand 2	D	558	561	anti-parallel
Strand 3	D	514	517	anti-parallel
Strand 4	D	495	498	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	541	543	first strand
Strand 2	D	519	523	anti-parallel
Strand 3	D	554	556	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	529	530	first strand
Strand 2	D	535	536	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HKS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HKS