Analysis of interatomic Contacts of Structural Units in PDB entry:
8HLE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HLE entry

There are 2 chains in PDB entry 8HLE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 22	PRO 401
B	ALA 22	PRO 401

There are 29 helices in PDB entry 8HLE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	63	Right-handed alpha
Helix 2	AA2	A	94	110	Right-handed alpha
Helix 3	AA3	A	110	115	Right-handed alpha
Helix 4	AA4	A	116	118	Right-handed 310
Helix 5	AA5	A	133	138	Right-handed alpha
Helix 6	AA6	A	140	147	Right-handed alpha
Helix 7	AA7	A	150	159	Right-handed alpha
Helix 8	AA8	A	159	172	Right-handed alpha
Helix 9	AA9	A	172	178	Right-handed alpha
Helix 10	AB1	A	195	202	Right-handed alpha
Helix 11	AB2	A	211	215	Right-handed 310
Helix 12	AB3	A	216	222	Right-handed alpha
Helix 13	AB4	A	315	319	Right-handed 310
Helix 14	AB5	A	344	349	Right-handed 310
Helix 15	AB6	A	379	386	Right-handed 310
Helix 16	AB7	B	36	63	Right-handed alpha
Helix 17	AB8	B	94	110	Right-handed alpha
Helix 18	AB9	B	110	116	Right-handed alpha
Helix 19	AC1	B	133	138	Right-handed alpha
Helix 20	AC2	B	140	147	Right-handed alpha
Helix 21	AC3	B	150	159	Right-handed alpha
Helix 22	AC4	B	159	172	Right-handed alpha
Helix 23	AC5	B	172	179	Right-handed alpha
Helix 24	AC6	B	195	202	Right-handed alpha
Helix 25	AC7	B	211	215	Right-handed 310
Helix 26	AC8	B	216	222	Right-handed alpha
Helix 27	AC9	B	315	319	Right-handed 310
Helix 28	AD1	B	344	349	Right-handed 310
Helix 29	AD2	B	382	386	Right-handed 310

There are 12 sheets in PDB entry 8HLE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	26	first strand
Strand 2	A	237	240	anti-parallel
Strand 3	A	243	244	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	77	first strand
Strand 2	A	87	90	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	205	first strand
Strand 2	A	223	229	anti-parallel
Strand 3	A	248	255	anti-parallel
Strand 4	A	354	361	anti-parallel
Strand 5	A	269	273	anti-parallel
Strand 6	A	329	332	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	264	first strand
Strand 2	A	372	373	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	321	first strand
Strand 2	A	284	288	anti-parallel
Strand 3	A	337	341	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	300	first strand
Strand 2	A	303	308	anti-parallel
Strand 3	A	392	397	anti-parallel
Strand 4	A	375	376	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	26	first strand
Strand 2	B	237	240	anti-parallel
Strand 3	B	243	244	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	77	first strand
Strand 2	B	87	90	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	205	first strand
Strand 2	B	223	229	anti-parallel
Strand 3	B	248	255	anti-parallel
Strand 4	B	354	361	anti-parallel
Strand 5	B	269	273	anti-parallel
Strand 6	B	329	332	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	264	first strand
Strand 2	B	372	373	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	321	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	337	341	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	300	first strand
Strand 2	B	303	308	anti-parallel
Strand 3	B	392	397	anti-parallel
Strand 4	B	375	376	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HLE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HLE