Analysis of interatomic Contacts of Structural Units in PDB entry:
8HLP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HLP entry

There are 3 chains in PDB entry 8HLP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 114	PRO 1655
F	PHE 27	CYS 1071
C	ASP 222	TRP 407

There are101 helices in PDB entry 8HLP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	114	124	Right-handed alpha
Helix 2	AA2	A	126	143	Right-handed alpha
Helix 3	AA3	A	153	180	Right-handed alpha
Helix 4	AA4	A	191	211	Right-handed alpha
Helix 5	AA5	A	234	242	Right-handed 310
Helix 6	AA6	A	243	251	Right-handed alpha
Helix 7	AA7	A	251	264	Right-handed alpha
Helix 8	AA8	A	267	290	Right-handed alpha
Helix 9	AA9	A	339	343	Right-handed 310
Helix 10	AB1	A	349	361	Right-handed alpha
Helix 11	AB2	A	364	377	Right-handed alpha
Helix 12	AB3	A	381	418	Right-handed alpha
Helix 13	AB4	A	419	445	Right-handed alpha
Helix 14	AB5	A	512	523	Right-handed alpha
Helix 15	AB6	A	523	543	Right-handed alpha
Helix 16	AB7	A	549	578	Right-handed alpha
Helix 17	AB8	A	579	586	Right-handed alpha
Helix 18	AB9	A	586	609	Right-handed alpha
Helix 19	AC1	A	612	627	Right-handed alpha
Helix 20	AC2	A	628	630	Right-handed 310
Helix 21	AC3	A	635	674	Right-handed alpha
Helix 22	AC4	A	691	705	Right-handed alpha
Helix 23	AC5	A	707	719	Right-handed alpha
Helix 24	AC6	A	729	778	Right-handed alpha
Helix 25	AC7	A	900	919	Right-handed alpha
Helix 26	AC8	A	929	972	Right-handed alpha
Helix 27	AC9	A	987	1008	Right-handed alpha
Helix 28	AD1	A	1009	1010	Right-handed 310
Helix 29	AD2	A	1011	1012	Right-handed 310
Helix 30	AD3	A	1013	1021	Right-handed alpha
Helix 31	AD4	A	1022	1025	Right-handed 310
Helix 32	AD5	A	1026	1032	Right-handed alpha
Helix 33	AD6	A	1034	1071	Right-handed alpha
Helix 34	AD7	A	1098	1100	Right-handed 310
Helix 35	AD8	A	1120	1133	Right-handed alpha
Helix 36	AD9	A	1136	1145	Right-handed alpha
Helix 37	AE1	A	1159	1161	Right-handed 310
Helix 38	AE2	A	1162	1173	Right-handed alpha
Helix 39	AE3	A	1173	1194	Right-handed alpha
Helix 40	AE4	A	1195	1197	Right-handed 310
Helix 41	AE5	A	1203	1212	Right-handed alpha
Helix 42	AE6	A	1213	1215	Right-handed 310
Helix 43	AE7	A	1226	1238	Right-handed alpha
Helix 44	AE8	A	1238	1259	Right-handed alpha
Helix 45	AE9	A	1264	1293	Right-handed alpha
Helix 46	AF1	A	1294	1299	Right-handed alpha
Helix 47	AF2	A	1301	1321	Right-handed alpha
Helix 48	AF3	A	1377	1383	Right-handed alpha
Helix 49	AF4	A	1384	1391	Right-handed alpha
Helix 50	AF5	A	1391	1408	Right-handed alpha
Helix 51	AF6	A	1408	1430	Right-handed alpha
Helix 52	AF7	A	1449	1462	Right-handed alpha
Helix 53	AF8	A	1465	1474	Right-handed alpha
Helix 54	AF9	A	1499	1526	Right-handed alpha
Helix 55	AG1	A	1526	1531	Right-handed alpha
Helix 56	AG2	A	1538	1553	Right-handed alpha
Helix 57	AG3	A	1582	1584	Right-handed 310
Helix 58	AG4	A	1585	1593	Right-handed alpha
Helix 59	AG5	A	1608	1618	Right-handed alpha
Helix 60	AG6	A	1625	1632	Right-handed alpha
Helix 61	AG7	A	1633	1638	Right-handed alpha
Helix 62	AG8	F	29	53	Right-handed alpha
Helix 63	AG9	F	53	64	Right-handed alpha
Helix 64	AH1	F	76	110	Right-handed alpha
Helix 65	AH2	F	178	187	Right-handed alpha
Helix 66	AH3	F	188	200	Right-handed alpha
Helix 67	AH4	F	237	240	Right-handed 310
Helix 68	AH5	F	241	249	Right-handed alpha
Helix 69	AH6	F	261	265	Right-handed 310
Helix 70	AH7	F	266	281	Right-handed alpha
Helix 71	AH8	F	313	324	Right-handed alpha
Helix 72	AH9	F	332	344	Right-handed alpha
Helix 73	AI1	F	345	350	Right-handed 310
Helix 74	AI2	F	369	376	Right-handed alpha
Helix 75	AI3	F	396	406	Right-handed alpha
Helix 76	AI4	F	418	424	Right-handed alpha
Helix 77	AI5	F	425	431	Right-handed alpha
Helix 78	AI6	F	431	437	Right-handed alpha
Helix 79	AI7	F	494	498	Right-handed alpha
Helix 80	AI8	F	560	565	Right-handed alpha
Helix 81	AI9	F	568	580	Right-handed alpha
Helix 82	AJ1	F	639	648	Right-handed alpha
Helix 83	AJ2	F	649	651	Right-handed 310
Helix 84	AJ3	F	652	657	Right-handed alpha
Helix 85	AJ4	F	675	690	Right-handed alpha
Helix 86	AJ5	F	699	719	Right-handed alpha
Helix 87	AJ6	F	747	752	Right-handed 310
Helix 88	AJ7	F	757	760	Right-handed 310
Helix 89	AJ8	F	761	770	Right-handed alpha
Helix 90	AJ9	F	817	827	Right-handed alpha
Helix 91	AK1	F	864	870	Right-handed alpha
Helix 92	AK2	F	879	887	Right-handed alpha
Helix 93	AK3	F	888	890	Right-handed 310
Helix 94	AK4	F	1042	1047	Right-handed alpha
Helix 95	AK5	C	240	257	Right-handed alpha
Helix 96	AK6	C	298	312	Right-handed alpha
Helix 97	AK7	C	326	332	Right-handed alpha
Helix 98	AK8	C	346	358	Right-handed alpha
Helix 99	AK9	C	364	375	Right-handed alpha
Helix 100	AL1	C	379	383	Right-handed 310
Helix 101	AL2	C	391	403	Right-handed alpha

There are 14 sheets in PDB entry 8HLP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	300	first strand
Strand 2	A	330	333	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1077	1078	first strand
Strand 2	A	1111	1112	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1092	1096	first strand
Strand 2	A	1104	1108	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	72	first strand
Strand 2	F	629	632	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	126	first strand
Strand 2	F	165	166	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	205	210	first strand
Strand 2	F	484	493	anti-parallel
Strand 3	F	458	467	anti-parallel
Strand 4	F	450	451	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	298	300	first strand
Strand 2	F	291	294	anti-parallel
Strand 3	F	256	258	parallel
Strand 4	F	357	362	parallel
Strand 5	F	383	388	parallel
Strand 6	F	409	411	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	521	522	first strand
Strand 2	F	511	515	anti-parallel
Strand 3	F	620	624	anti-parallel
Strand 4	F	600	606	anti-parallel
Strand 5	F	589	593	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	741	743	first strand
Strand 2	F	729	735	anti-parallel
Strand 3	F	811	816	anti-parallel
Strand 4	F	796	797	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	800	801	first strand
Strand 2	F	806	807	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	858	862	first strand
Strand 2	F	850	854	anti-parallel
Strand 3	F	1014	1017	anti-parallel
Strand 4	F	1001	1007	anti-parallel
Strand 5	F	989	994	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	893	895	first strand
Strand 2	F	980	982	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	899	903	first strand
Strand 2	F	973	977	anti-parallel
Strand 3	F	1036	1038	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	232	first strand
Strand 2	C	338	340	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HLP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HLP