Analysis of interatomic Contacts of Structural Units in PDB entry:
8HLS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HLS entry

There are 2 chains in PDB entry 8HLS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 25	HIS 596
B	VAL 25	HIS 596

There are 11 helices in PDB entry 8HLS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	140	145	Right-handed 310
Helix 2	AA2	A	379	383	Right-handed alpha
Helix 3	AA3	A	391	399	Right-handed alpha
Helix 4	AA4	A	441	443	Right-handed 310
Helix 5	AA5	A	502	507	Right-handed alpha
Helix 6	AA6	B	141	147	Right-handed 310
Helix 7	AA7	B	336	340	Right-handed 310
Helix 8	AA8	B	379	383	Right-handed alpha
Helix 9	AA9	B	391	398	Right-handed alpha
Helix 10	AB1	B	441	443	Right-handed 310
Helix 11	AB2	B	502	507	Right-handed alpha

There are 26 sheets in PDB entry 8HLS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	373	378	anti-parallel
Strand 3	A	360	367	anti-parallel
Strand 4	A	347	355	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	A	50	53	anti-parallel
Strand 3	A	61	65	anti-parallel
Strand 4	A	73	76	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	97	first strand
Strand 2	A	104	107	anti-parallel
Strand 3	A	115	118	anti-parallel
Strand 4	A	124	128	anti-parallel
Strand 5	A	134	135	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	165	171	anti-parallel
Strand 3	A	158	160	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	165	171	anti-parallel
Strand 3	A	177	182	anti-parallel
Strand 4	A	190	191	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	223	first strand
Strand 2	A	229	234	anti-parallel
Strand 3	A	239	245	anti-parallel
Strand 4	A	256	261	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	271	first strand
Strand 2	A	277	281	anti-parallel
Strand 3	A	307	313	anti-parallel
Strand 4	A	321	328	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	495	496	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	390	first strand
Strand 2	A	585	594	anti-parallel
Strand 3	A	432	436	anti-parallel
Strand 4	A	421	424	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	390	first strand
Strand 2	A	585	594	anti-parallel
Strand 3	A	467	476	anti-parallel
Strand 4	A	536	543	anti-parallel
Strand 5	A	546	551	anti-parallel
Strand 6	A	554	560	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	409	first strand
Strand 2	A	413	418	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	446	first strand
Strand 2	A	451	452	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	465	first strand
Strand 2	A	569	576	anti-parallel
Strand 3	A	486	492	anti-parallel
Strand 4	A	509	514	anti-parallel
Strand 5	A	520	523	anti-parallel
Strand 6	A	526	529	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	373	378	anti-parallel
Strand 3	B	360	367	anti-parallel
Strand 4	B	347	355	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	44	first strand
Strand 2	B	50	53	anti-parallel
Strand 3	B	61	65	anti-parallel
Strand 4	B	73	76	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	97	first strand
Strand 2	B	104	107	anti-parallel
Strand 3	B	115	118	anti-parallel
Strand 4	B	124	128	anti-parallel
Strand 5	B	134	135	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	165	171	anti-parallel
Strand 3	B	158	160	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	165	171	anti-parallel
Strand 3	B	177	182	anti-parallel
Strand 4	B	190	191	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	223	first strand
Strand 2	B	229	234	anti-parallel
Strand 3	B	239	245	anti-parallel
Strand 4	B	256	261	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	271	first strand
Strand 2	B	277	281	anti-parallel
Strand 3	B	307	313	anti-parallel
Strand 4	B	321	328	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	495	496	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	390	first strand
Strand 2	B	585	594	anti-parallel
Strand 3	B	432	436	anti-parallel
Strand 4	B	421	424	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	390	first strand
Strand 2	B	585	594	anti-parallel
Strand 3	B	467	476	anti-parallel
Strand 4	B	536	543	anti-parallel
Strand 5	B	546	551	anti-parallel
Strand 6	B	554	560	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	400	first strand
Strand 2	B	457	465	anti-parallel
Strand 3	B	569	576	anti-parallel
Strand 4	B	486	492	anti-parallel
Strand 5	B	509	514	anti-parallel
Strand 6	B	520	523	anti-parallel
Strand 7	B	526	529	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	409	first strand
Strand 2	B	413	418	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	B	451	452	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HLS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HLS