Analysis of interatomic Contacts of Structural Units in PDB entry:
8HM0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HM0 entry

There are 3 chains in PDB entry 8HM0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	SER 3	PHE 425
A	MET 1	GLY 998
B	SER 3	TYR 218

There are 43 helices in PDB entry 8HM0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	3	19	Right-handed alpha
Helix 2	AA2	C	20	23	Right-handed 310
Helix 3	AA3	C	24	43	Right-handed alpha
Helix 4	AA4	C	107	121	Right-handed alpha
Helix 5	AA5	C	147	159	Right-handed alpha
Helix 6	AA6	C	177	188	Right-handed alpha
Helix 7	AA7	C	316	321	Right-handed alpha
Helix 8	AA8	C	330	341	Right-handed alpha
Helix 9	AA9	C	343	350	Right-handed alpha
Helix 10	AB1	C	352	360	Right-handed alpha
Helix 11	AB2	C	367	373	Right-handed alpha
Helix 12	AB3	C	407	425	Right-handed alpha
Helix 13	AB4	A	44	49	Right-handed alpha
Helix 14	AB5	A	108	118	Right-handed alpha
Helix 15	AB6	A	144	149	Right-handed alpha
Helix 16	AB7	A	206	208	Right-handed 310
Helix 17	AB8	A	209	220	Right-handed alpha
Helix 18	AB9	A	240	253	Right-handed alpha
Helix 19	AC1	A	267	281	Right-handed alpha
Helix 20	AC2	A	330	339	Right-handed alpha
Helix 21	AC3	A	345	354	Right-handed alpha
Helix 22	AC4	A	380	389	Right-handed alpha
Helix 23	AC5	A	439	445	Right-handed alpha
Helix 24	AC6	A	448	473	Right-handed alpha
Helix 25	AC7	A	474	486	Right-handed alpha
Helix 26	AC8	A	497	502	Right-handed alpha
Helix 27	AC9	A	502	511	Right-handed alpha
Helix 28	AD1	A	552	561	Right-handed alpha
Helix 29	AD2	A	579	590	Right-handed alpha
Helix 30	AD3	A	621	643	Right-handed alpha
Helix 31	AD4	A	648	666	Right-handed alpha
Helix 32	AD5	A	667	672	Right-handed alpha
Helix 33	AD6	A	680	701	Right-handed alpha
Helix 34	AD7	A	767	776	Right-handed alpha
Helix 35	AD8	A	842	847	Right-handed alpha
Helix 36	AD9	A	859	883	Right-handed alpha
Helix 37	AE1	A	970	979	Right-handed alpha
Helix 38	AE2	A	987	996	Right-handed alpha
Helix 39	AE3	B	19	38	Right-handed alpha
Helix 40	AE4	B	50	55	Right-handed 310
Helix 41	AE5	B	87	96	Right-handed alpha
Helix 42	AE6	B	133	150	Right-handed alpha
Helix 43	AE7	B	196	202	Right-handed alpha

There are 14 sheets in PDB entry 8HM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	132	first strand
Strand 2	C	135	137	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	219	first strand
Strand 2	C	263	268	anti-parallel
Strand 3	C	273	275	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	229	first strand
Strand 2	C	232	234	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	380	first strand
Strand 2	C	383	389	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	136	first strand
Strand 2	A	139	141	anti-parallel
Strand 3	A	29	35	parallel
Strand 4	A	16	24	anti-parallel
Strand 5	A	2	12	anti-parallel
Strand 6	A	124	126	anti-parallel
Strand 7	A	152	153	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	43	first strand
Strand 2	A	83	93	anti-parallel
Strand 3	A	56	67	anti-parallel
Strand 4	A	515	518	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	A	568	572	parallel
Strand 3	A	612	616	anti-parallel
Strand 4	A	596	600	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	169	first strand
Strand 2	A	183	191	anti-parallel
Strand 3	A	197	204	anti-parallel
Strand 4	A	236	239	parallel
Strand 5	A	222	223	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	327	328	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	287	first strand
Strand 2	A	294	296	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	302	first strand
Strand 2	A	317	319	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	364	first strand
Strand 2	A	367	372	anti-parallel
Strand 3	A	415	419	anti-parallel
Strand 4	A	401	409	anti-parallel
Strand 5	A	394	397	anti-parallel
Strand 6	A	428	433	anti-parallel
Strand 7	A	355	364	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	745	748	first strand
Strand 2	A	755	759	anti-parallel
Strand 3	A	546	548	anti-parallel
Strand 4	A	792	794	anti-parallel
Strand 5	A	811	812	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	119	first strand
Strand 2	B	62	65	parallel
Strand 3	B	155	157	parallel
Strand 4	B	176	177	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HM0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HM0