Analysis of interatomic Contacts of Structural Units in PDB entry:
8HM3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HM3 entry

There are 4 chains in PDB entry 8HM3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	CYS 76
B	MET 31	LYS 457
C	VAL 3	CYS 76
D	MET 31	LYS 457

There are 41 helices in PDB entry 8HM3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	35	Right-handed alpha
Helix 2	AA2	B	44	57	Right-handed alpha
Helix 3	AA3	B	64	86	Right-handed alpha
Helix 4	AA4	B	91	111	Right-handed alpha
Helix 5	AA5	B	112	121	Right-handed alpha
Helix 6	AA6	B	123	150	Right-handed alpha
Helix 7	AA7	B	155	165	Right-handed alpha
Helix 8	AA8	B	167	171	Right-handed 310
Helix 9	AA9	B	190	210	Right-handed alpha
Helix 10	AB1	B	214	223	Right-handed alpha
Helix 11	AB2	B	225	230	Right-handed alpha
Helix 12	AB3	B	239	243	Right-handed 310
Helix 13	AB4	B	244	253	Right-handed alpha
Helix 14	AB5	B	295	315	Right-handed alpha
Helix 15	AB6	B	319	328	Right-handed alpha
Helix 16	AB7	B	333	337	Right-handed 310
Helix 17	AB8	B	353	355	Right-handed 310
Helix 18	AB9	B	356	364	Right-handed alpha
Helix 19	AC1	B	406	433	Right-handed alpha
Helix 20	AC2	B	440	443	Right-handed 310
Helix 21	AC3	C	25	35	Right-handed alpha
Helix 22	AC4	C	56	60	Right-handed 310
Helix 23	AC5	D	44	57	Right-handed alpha
Helix 24	AC6	D	64	86	Right-handed alpha
Helix 25	AC7	D	91	111	Right-handed alpha
Helix 26	AC8	D	112	121	Right-handed alpha
Helix 27	AC9	D	123	150	Right-handed alpha
Helix 28	AD1	D	155	165	Right-handed alpha
Helix 29	AD2	D	167	171	Right-handed 310
Helix 30	AD3	D	190	210	Right-handed alpha
Helix 31	AD4	D	214	223	Right-handed alpha
Helix 32	AD5	D	225	230	Right-handed alpha
Helix 33	AD6	D	241	243	Right-handed 310
Helix 34	AD7	D	244	253	Right-handed alpha
Helix 35	AD8	D	295	315	Right-handed alpha
Helix 36	AD9	D	319	328	Right-handed alpha
Helix 37	AE1	D	330	335	Right-handed alpha
Helix 38	AE2	D	353	355	Right-handed 310
Helix 39	AE3	D	356	364	Right-handed alpha
Helix 40	AE4	D	406	433	Right-handed alpha
Helix 41	AE5	D	440	443	Right-handed 310

There are 10 sheets in PDB entry 8HM3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	A	2	6	anti-parallel
Strand 3	A	66	71	parallel
Strand 4	A	41	45	anti-parallel
Strand 5	A	48	49	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	43	first strand
Strand 2	B	33	37	anti-parallel
Strand 3	B	436	438	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	399	400	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	351	first strand
Strand 2	B	177	185	anti-parallel
Strand 3	B	385	396	anti-parallel
Strand 4	B	375	378	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	266	first strand
Strand 2	B	269	279	anti-parallel
Strand 3	B	282	290	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	4	6	anti-parallel
Strand 3	C	66	71	parallel
Strand 4	C	41	45	anti-parallel
Strand 5	C	48	49	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	43	first strand
Strand 2	D	33	37	anti-parallel
Strand 3	D	436	438	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	174	first strand
Strand 2	D	399	400	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	351	first strand
Strand 2	D	177	185	anti-parallel
Strand 3	D	385	396	anti-parallel
Strand 4	D	375	378	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	239	first strand
Strand 2	D	282	290	anti-parallel
Strand 3	D	269	279	anti-parallel
Strand 4	D	264	266	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HM3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HM3