Analysis of interatomic Contacts of Structural Units in PDB entry:
8HM4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HM4 entry

There are 2 chains in PDB entry 8HM4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 30LYS 454
B
 VAL 33ILE 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8HM4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 57Right-handed alpha
Helix 2
AA2
A
64 87Right-handed alpha
Helix 3
AA3
A
95 106Right-handed alpha
Helix 4
AA4
A
115 119Right-handed 310
Helix 5
AA5
A
122 147Right-handed alpha
Helix 6
AA6
A
156 165Right-handed alpha
Helix 7
AA7
A
190 210Right-handed alpha
Helix 8
AA8
A
214 223Right-handed alpha
Helix 9
AA9
A
225 231Right-handed alpha
Helix 10
AB1
A
244 254Right-handed alpha
Helix 11
AB2
A
295 315Right-handed alpha
Helix 12
AB3
A
319 328Right-handed alpha
Helix 13
AB4
A
356 365Right-handed alpha
Helix 14
AB5
A
406 434Right-handed alpha
Helix 15
AB6
A
440 443Right-handed 310
Helix 16
AB7
B
43 57Right-handed alpha
Helix 17
AB8
B
64 83Right-handed alpha
Helix 18
AB9
B
84 86Right-handed 310
Helix 19
AC1
B
91 109Right-handed alpha
Helix 20
AC2
B
115 121Right-handed alpha
Helix 21
AC3
B
123 147Right-handed alpha
Helix 22
AC4
B
190 210Right-handed alpha
Helix 23
AC5
B
214 223Right-handed alpha
Helix 24
AC6
B
225 231Right-handed alpha
Helix 25
AC7
B
244 254Right-handed alpha
Helix 26
AC8
B
295 315Right-handed alpha
Helix 27
AC9
B
319 327Right-handed alpha
Helix 28
AD1
B
356 365Right-handed alpha
Helix 29
AD2
B
407 432Right-handed alpha
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There are 6 sheets in PDB entry 8HM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
33 37anti-parallel
Strand 3
A
437 438anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 185first strand
Strand 2
A
385 396anti-parallel
Strand 3
A
375 378anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 265first strand
Strand 2
A
270 279anti-parallel
Strand 3
A
282 290anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
41 42anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 185first strand
Strand 2
B
385 396anti-parallel
Strand 3
B
375 378anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 238first strand
Strand 2
B
282 290anti-parallel
Strand 3
B
270 279anti-parallel
Strand 4
B
264 265anti-parallel
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