Analysis of interatomic Contacts of Structural Units in PDB entry:
8HM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HM5 entry

There are 2 chains in PDB entry 8HM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 7VAL 322
B
 GLY 7SER 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8HM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 44Right-handed 310
Helix 2
AA2
A
45 55Right-handed alpha
Helix 3
AA3
A
75 79Right-handed 310
Helix 4
AA4
A
80 95Right-handed alpha
Helix 5
AA5
A
106 119Right-handed alpha
Helix 6
AA6
A
140 148Right-handed alpha
Helix 7
AA7
A
154 161Right-handed alpha
Helix 8
AA8
A
163 169Right-handed alpha
Helix 9
AA9
A
170 182Right-handed alpha
Helix 10
AB1
A
214 229Right-handed alpha
Helix 11
AB2
A
230 247Right-handed alpha
Helix 12
AB3
A
248 251Right-handed 310
Helix 13
AB4
A
267 273Right-handed 310
Helix 14
AB5
A
276 281Right-handed alpha
Helix 15
AB6
A
299 304Right-handed alpha
Helix 16
AB7
A
304 322Right-handed alpha
Helix 17
AB8
B
41 44Right-handed 310
Helix 18
AB9
B
45 54Right-handed alpha
Helix 19
AC1
B
75 79Right-handed 310
Helix 20
AC2
B
80 95Right-handed alpha
Helix 21
AC3
B
106 119Right-handed alpha
Helix 22
AC4
B
140 148Right-handed alpha
Helix 23
AC5
B
154 161Right-handed alpha
Helix 24
AC6
B
163 169Right-handed alpha
Helix 25
AC7
B
170 182Right-handed alpha
Helix 26
AC8
B
214 229Right-handed alpha
Helix 27
AC9
B
230 247Right-handed alpha
Helix 28
AD1
B
248 251Right-handed 310
Helix 29
AD2
B
267 273Right-handed 310
Helix 30
AD3
B
299 304Right-handed alpha
Helix 31
AD4
B
304 324Right-handed alpha
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There are 2 sheets in PDB entry 8HM5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 16first strand
Strand 2
A
19 26anti-parallel
Strand 3
A
58 62anti-parallel
Strand 4
A
31 35parallel
Strand 5
A
100 105parallel
Strand 6
A
123 129parallel
Strand 7
A
259 264parallel
Strand 8
A
287 293parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 16first strand
Strand 2
B
19 27anti-parallel
Strand 3
B
58 62anti-parallel
Strand 4
B
31 35parallel
Strand 5
B
100 105parallel
Strand 6
B
123 129parallel
Strand 7
B
259 264parallel
Strand 8
B
287 293parallel
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