Analysis of interatomic Contacts of Structural Units in PDB entry:
8HMC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HMC entry

There are 4 chains in PDB entry 8HMC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 712
B	MET 1	ILE 1195
C	SER 695	LYS 1334
F	MET 1	GLN 146

There are 85 helices in PDB entry 8HMC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	245	247	Right-handed 310
Helix 2	AA2	A	582	592	Right-handed alpha
Helix 3	AA3	A	594	603	Right-handed alpha
Helix 4	AA4	A	607	621	Right-handed alpha
Helix 5	AA5	A	623	634	Right-handed alpha
Helix 6	AA6	A	637	653	Right-handed alpha
Helix 7	AA7	A	656	668	Right-handed alpha
Helix 8	AA8	A	670	681	Right-handed alpha
Helix 9	AA9	A	683	693	Right-handed alpha
Helix 10	AB1	A	696	707	Right-handed alpha
Helix 11	AB2	B	632	638	Right-handed alpha
Helix 12	AB3	B	655	668	Right-handed alpha
Helix 13	AB4	B	669	681	Right-handed alpha
Helix 14	AB5	B	682	696	Right-handed alpha
Helix 15	AB6	B	699	710	Right-handed alpha
Helix 16	AB7	B	711	723	Right-handed alpha
Helix 17	AB8	B	727	739	Right-handed alpha
Helix 18	AB9	B	740	752	Right-handed alpha
Helix 19	AC1	B	753	765	Right-handed alpha
Helix 20	AC2	B	766	775	Right-handed alpha
Helix 21	AC3	B	780	798	Right-handed alpha
Helix 22	AC4	B	800	812	Right-handed alpha
Helix 23	AC5	B	813	825	Right-handed alpha
Helix 24	AC6	B	827	837	Right-handed alpha
Helix 25	AC7	B	841	855	Right-handed alpha
Helix 26	AC8	B	856	868	Right-handed alpha
Helix 27	AC9	B	870	880	Right-handed alpha
Helix 28	AD1	B	882	894	Right-handed alpha
Helix 29	AD2	B	896	912	Right-handed alpha
Helix 30	AD3	B	914	925	Right-handed alpha
Helix 31	AD4	B	927	944	Right-handed alpha
Helix 32	AD5	B	948	976	Right-handed alpha
Helix 33	AD6	B	979	995	Right-handed alpha
Helix 34	AD7	B	997	1005	Right-handed alpha
Helix 35	AD8	B	1007	1025	Right-handed alpha
Helix 36	AD9	B	1027	1042	Right-handed alpha
Helix 37	AE1	B	1046	1061	Right-handed alpha
Helix 38	AE2	B	1063	1075	Right-handed alpha
Helix 39	AE3	B	1081	1099	Right-handed alpha
Helix 40	AE4	B	1160	1168	Right-handed alpha
Helix 41	AE5	B	1180	1195	Right-handed alpha
Helix 42	AE6	C	697	711	Right-handed alpha
Helix 43	AE7	C	715	730	Right-handed alpha
Helix 44	AE8	C	734	747	Right-handed alpha
Helix 45	AE9	C	748	763	Right-handed alpha
Helix 46	AF1	C	766	780	Right-handed alpha
Helix 47	AF2	C	782	797	Right-handed alpha
Helix 48	AF3	C	800	814	Right-handed alpha
Helix 49	AF4	C	816	831	Right-handed alpha
Helix 50	AF5	C	837	858	Right-handed alpha
Helix 51	AF6	C	867	891	Right-handed alpha
Helix 52	AF7	C	895	917	Right-handed alpha
Helix 53	AF8	C	919	934	Right-handed alpha
Helix 54	AF9	C	944	962	Right-handed alpha
Helix 55	AG1	C	963	978	Right-handed alpha
Helix 56	AG2	C	981	996	Right-handed alpha
Helix 57	AG3	C	1000	1012	Right-handed alpha
Helix 58	AG4	C	1015	1029	Right-handed alpha
Helix 59	AG5	C	1031	1045	Right-handed alpha
Helix 60	AG6	C	1051	1064	Right-handed alpha
Helix 61	AG7	C	1067	1079	Right-handed alpha
Helix 62	AG8	C	1084	1098	Right-handed alpha
Helix 63	AG9	C	1117	1134	Right-handed alpha
Helix 64	AH1	C	1136	1150	Right-handed alpha
Helix 65	AH2	C	1151	1154	Right-handed 310
Helix 66	AH3	C	1156	1172	Right-handed alpha
Helix 67	AH4	C	1175	1189	Right-handed alpha
Helix 68	AH5	C	1192	1204	Right-handed alpha
Helix 69	AH6	C	1211	1228	Right-handed alpha
Helix 70	AH7	C	1231	1246	Right-handed alpha
Helix 71	AH8	C	1249	1263	Right-handed alpha
Helix 72	AH9	C	1265	1280	Right-handed alpha
Helix 73	AI1	C	1285	1298	Right-handed alpha
Helix 74	AI2	C	1300	1315	Right-handed alpha
Helix 75	AI3	C	1319	1325	Right-handed alpha
Helix 76	AI4	C	1325	1334	Right-handed alpha
Helix 77	AI5	F	31	36	Right-handed alpha
Helix 78	AI6	F	37	40	Right-handed 310
Helix 79	AI7	F	48	60	Right-handed alpha
Helix 80	AI8	F	77	81	Right-handed 310
Helix 81	AI9	F	83	89	Right-handed alpha
Helix 82	AJ1	F	93	98	Right-handed alpha
Helix 83	AJ2	F	114	131	Right-handed alpha
Helix 84	AJ3	F	132	139	Right-handed alpha
Helix 85	AJ4	F	141	146	Right-handed alpha

There are 28 sheets in PDB entry 8HMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	10	first strand
Strand 2	A	310	317	anti-parallel
Strand 3	A	300	306	anti-parallel
Strand 4	A	279	284	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	43	47	anti-parallel
Strand 3	A	59	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	71	first strand
Strand 2	A	78	83	anti-parallel
Strand 3	A	87	93	anti-parallel
Strand 4	A	101	108	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	118	first strand
Strand 2	A	125	129	anti-parallel
Strand 3	A	132	136	anti-parallel
Strand 4	A	144	147	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	157	first strand
Strand 2	A	164	168	anti-parallel
Strand 3	A	172	176	anti-parallel
Strand 4	A	184	187	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	197	first strand
Strand 2	A	209	213	anti-parallel
Strand 3	A	217	221	anti-parallel
Strand 4	A	232	233	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	243	first strand
Strand 2	A	249	254	anti-parallel
Strand 3	A	258	263	anti-parallel
Strand 4	A	268	274	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	324	first strand
Strand 2	A	329	332	anti-parallel
Strand 3	A	337	341	anti-parallel
Strand 4	A	348	352	anti-parallel
Strand 5	F	42	43	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	363	first strand
Strand 2	A	366	371	anti-parallel
Strand 3	A	374	380	anti-parallel
Strand 4	A	389	395	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	407	first strand
Strand 2	A	410	415	anti-parallel
Strand 3	A	418	422	anti-parallel
Strand 4	A	428	433	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	443	first strand
Strand 2	A	453	457	anti-parallel
Strand 3	A	462	465	anti-parallel
Strand 4	A	473	476	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	482	487	first strand
Strand 2	A	493	498	anti-parallel
Strand 3	A	503	507	anti-parallel
Strand 4	A	513	517	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	522	525	first strand
Strand 2	A	533	536	anti-parallel
Strand 3	A	541	544	anti-parallel
Strand 4	A	551	552	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	563	first strand
Strand 2	A	566	571	anti-parallel
Strand 3	A	574	578	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	9	first strand
Strand 2	B	331	338	anti-parallel
Strand 3	B	323	328	anti-parallel
Strand 4	B	315	317	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	22	first strand
Strand 2	B	29	32	anti-parallel
Strand 3	B	38	41	anti-parallel
Strand 4	B	64	65	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	78	first strand
Strand 2	B	85	89	anti-parallel
Strand 3	B	94	100	anti-parallel
Strand 4	B	105	110	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	124	first strand
Strand 2	B	130	135	anti-parallel
Strand 3	B	140	144	anti-parallel
Strand 4	B	149	153	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	170	174	anti-parallel
Strand 3	B	180	184	anti-parallel
Strand 4	B	189	192	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	219	first strand
Strand 2	B	234	238	anti-parallel
Strand 3	B	242	246	anti-parallel
Strand 4	B	255	258	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	268	first strand
Strand 2	B	274	281	anti-parallel
Strand 3	B	288	295	anti-parallel
Strand 4	B	302	305	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	345	first strand
Strand 2	B	350	356	anti-parallel
Strand 3	B	363	369	anti-parallel
Strand 4	B	375	380	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	388	first strand
Strand 2	B	393	399	anti-parallel
Strand 3	B	404	410	anti-parallel
Strand 4	B	416	422	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	431	first strand
Strand 2	B	436	439	anti-parallel
Strand 3	B	443	447	anti-parallel
Strand 4	B	471	475	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	504	506	first strand
Strand 2	B	510	514	anti-parallel
Strand 3	B	519	524	anti-parallel
Strand 4	B	530	535	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	551	555	anti-parallel
Strand 3	B	561	565	anti-parallel
Strand 4	B	572	574	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	586	first strand
Strand 2	B	594	597	anti-parallel
Strand 3	B	601	605	anti-parallel
Strand 4	B	614	615	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	619	624	first strand
Strand 2	B	627	631	anti-parallel
Strand 3	B	651	654	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HMC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HMC