Analysis of interatomic Contacts of Structural Units in PDB entry:
8HME

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HME entry

There are 3 chains in PDB entry 8HME (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 720	PHE 1251
D	MET 1	ASP 1084
E	MET 1	GLY 1129

There are 88 helices in PDB entry 8HME. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	720	740	Right-handed alpha
Helix 2	AA2	A	741	751	Right-handed alpha
Helix 3	AA3	A	755	766	Right-handed alpha
Helix 4	AA4	A	767	778	Right-handed alpha
Helix 5	AA5	A	783	797	Right-handed alpha
Helix 6	AA6	A	799	811	Right-handed alpha
Helix 7	AA7	A	812	823	Right-handed alpha
Helix 8	AA8	A	826	836	Right-handed alpha
Helix 9	AA9	A	840	854	Right-handed alpha
Helix 10	AB1	A	856	868	Right-handed alpha
Helix 11	AB2	A	870	887	Right-handed alpha
Helix 12	AB3	A	889	908	Right-handed alpha
Helix 13	AB4	A	915	947	Right-handed alpha
Helix 14	AB5	A	954	973	Right-handed alpha
Helix 15	AB6	A	983	996	Right-handed alpha
Helix 16	AB7	A	998	1012	Right-handed alpha
Helix 17	AB8	A	1018	1031	Right-handed alpha
Helix 18	AB9	A	1089	1104	Right-handed alpha
Helix 19	AC1	A	1111	1123	Right-handed alpha
Helix 20	AC2	A	1144	1161	Right-handed alpha
Helix 21	AC3	A	1169	1176	Right-handed alpha
Helix 22	AC4	A	1219	1229	Right-handed alpha
Helix 23	AC5	D	271	282	Right-handed alpha
Helix 24	AC6	D	617	630	Right-handed alpha
Helix 25	AC7	D	645	649	Right-handed 310
Helix 26	AC8	D	714	717	Right-handed 310
Helix 27	AC9	D	725	739	Right-handed alpha
Helix 28	AD1	D	741	751	Right-handed alpha
Helix 29	AD2	D	754	768	Right-handed alpha
Helix 30	AD3	D	771	781	Right-handed alpha
Helix 31	AD4	D	783	794	Right-handed alpha
Helix 32	AD5	D	798	810	Right-handed alpha
Helix 33	AD6	D	812	823	Right-handed alpha
Helix 34	AD7	D	826	837	Right-handed alpha
Helix 35	AD8	D	838	850	Right-handed alpha
Helix 36	AD9	D	853	868	Right-handed alpha
Helix 37	AE1	D	870	880	Right-handed alpha
Helix 38	AE2	D	886	896	Right-handed alpha
Helix 39	AE3	D	897	909	Right-handed alpha
Helix 40	AE4	D	910	924	Right-handed alpha
Helix 41	AE5	D	926	938	Right-handed alpha
Helix 42	AE6	D	939	950	Right-handed alpha
Helix 43	AE7	D	952	964	Right-handed alpha
Helix 44	AE8	D	965	980	Right-handed alpha
Helix 45	AE9	D	981	992	Right-handed alpha
Helix 46	AF1	D	994	1006	Right-handed alpha
Helix 47	AF2	D	1008	1018	Right-handed alpha
Helix 48	AF3	D	1019	1033	Right-handed alpha
Helix 49	AF4	D	1036	1045	Right-handed alpha
Helix 50	AF5	D	1048	1060	Right-handed alpha
Helix 51	AF6	D	1062	1081	Right-handed alpha
Helix 52	AF7	E	11	16	Right-handed alpha
Helix 53	AF8	E	99	102	Right-handed 310
Helix 54	AF9	E	264	269	Right-handed alpha
Helix 55	AG1	E	321	325	Right-handed 310
Helix 56	AG2	E	659	665	Right-handed alpha
Helix 57	AG3	E	671	686	Right-handed alpha
Helix 58	AG4	E	687	698	Right-handed alpha
Helix 59	AG5	E	700	714	Right-handed alpha
Helix 60	AG6	E	716	728	Right-handed alpha
Helix 61	AG7	E	730	742	Right-handed alpha
Helix 62	AG8	E	744	757	Right-handed alpha
Helix 63	AG9	E	759	769	Right-handed alpha
Helix 64	AH1	E	771	783	Right-handed alpha
Helix 65	AH2	E	787	795	Right-handed alpha
Helix 66	AH3	E	796	798	Right-handed 310
Helix 67	AH4	E	799	814	Right-handed alpha
Helix 68	AH5	E	816	834	Right-handed alpha
Helix 69	AH6	E	837	859	Right-handed alpha
Helix 70	AH7	E	861	872	Right-handed alpha
Helix 71	AH8	E	874	889	Right-handed alpha
Helix 72	AH9	E	891	901	Right-handed alpha
Helix 73	AI1	E	904	914	Right-handed alpha
Helix 74	AI2	E	916	927	Right-handed alpha
Helix 75	AI3	E	929	944	Right-handed alpha
Helix 76	AI4	E	945	956	Right-handed alpha
Helix 77	AI5	E	959	969	Right-handed alpha
Helix 78	AI6	E	972	983	Right-handed alpha
Helix 79	AI7	E	986	999	Right-handed alpha
Helix 80	AI8	E	1003	1014	Right-handed alpha
Helix 81	AI9	E	1017	1026	Right-handed alpha
Helix 82	AJ1	E	1028	1037	Right-handed alpha
Helix 83	AJ2	E	1043	1053	Right-handed alpha
Helix 84	AJ3	E	1057	1067	Right-handed alpha
Helix 85	AJ4	E	1069	1078	Right-handed alpha
Helix 86	AJ5	E	1084	1095	Right-handed alpha
Helix 87	AJ6	E	1099	1111	Right-handed alpha
Helix 88	AJ7	E	1117	1129	Right-handed alpha

There are 36 sheets in PDB entry 8HME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1049	1050	first strand
Strand 2	A	1135	1139	anti-parallel
Strand 3	A	1126	1130	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1069	1070	first strand
Strand 2	A	1075	1076	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1167	1168	first strand
Strand 2	A	1079	1084	parallel
Strand 3	A	1195	1200	anti-parallel
Strand 4	A	1184	1185	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1207	1210	first strand
Strand 2	A	1215	1218	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	9	first strand
Strand 2	D	368	376	anti-parallel
Strand 3	D	360	365	anti-parallel
Strand 4	D	351	355	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	22	first strand
Strand 2	D	31	34	anti-parallel
Strand 3	D	39	42	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	64	first strand
Strand 2	D	70	75	anti-parallel
Strand 3	D	80	84	anti-parallel
Strand 4	D	89	93	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	106	first strand
Strand 2	D	112	117	anti-parallel
Strand 3	D	121	126	anti-parallel
Strand 4	D	129	135	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	145	first strand
Strand 2	D	160	163	anti-parallel
Strand 3	D	169	172	anti-parallel
Strand 4	D	179	182	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	194	first strand
Strand 2	D	199	204	anti-parallel
Strand 3	D	208	214	anti-parallel
Strand 4	D	219	220	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	194	first strand
Strand 2	D	199	204	anti-parallel
Strand 3	D	208	214	anti-parallel
Strand 4	D	225	227	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	242	first strand
Strand 2	D	246	250	anti-parallel
Strand 3	D	256	260	anti-parallel
Strand 4	D	265	269	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	303	first strand
Strand 2	D	308	313	anti-parallel
Strand 3	D	317	323	anti-parallel
Strand 4	D	337	344	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	382	first strand
Strand 2	D	385	388	anti-parallel
Strand 3	D	394	400	anti-parallel
Strand 4	D	405	411	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	421	first strand
Strand 2	D	425	429	anti-parallel
Strand 3	D	434	440	anti-parallel
Strand 4	D	447	454	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	460	464	first strand
Strand 2	D	467	472	anti-parallel
Strand 3	D	475	479	anti-parallel
Strand 4	D	485	490	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	500	504	first strand
Strand 2	D	507	511	anti-parallel
Strand 3	D	516	521	anti-parallel
Strand 4	D	528	535	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	545	551	first strand
Strand 2	D	557	563	anti-parallel
Strand 3	D	575	580	anti-parallel
Strand 4	D	585	590	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	595	602	first strand
Strand 2	D	609	616	anti-parallel
Strand 3	D	651	662	anti-parallel
Strand 4	D	666	676	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	679	685	first strand
Strand 2	D	689	696	anti-parallel
Strand 3	D	705	712	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	10	first strand
Strand 2	E	348	352	anti-parallel
Strand 3	E	338	343	anti-parallel
Strand 4	E	327	332	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	24	first strand
Strand 2	E	31	34	anti-parallel
Strand 3	E	39	43	anti-parallel
Strand 4	E	49	54	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	66	first strand
Strand 2	E	72	77	anti-parallel
Strand 3	E	82	87	anti-parallel
Strand 4	E	92	97	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	109	first strand
Strand 2	E	115	120	anti-parallel
Strand 3	E	125	129	anti-parallel
Strand 4	E	134	138	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	151	first strand
Strand 2	E	157	161	anti-parallel
Strand 3	E	165	169	anti-parallel
Strand 4	E	180	181	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	186	192	first strand
Strand 2	E	205	210	anti-parallel
Strand 3	E	214	218	anti-parallel
Strand 4	E	227	229	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	244	first strand
Strand 2	E	248	253	anti-parallel
Strand 3	E	257	262	anti-parallel
Strand 4	E	273	276	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	284	288	first strand
Strand 2	E	293	298	anti-parallel
Strand 3	E	301	305	anti-parallel
Strand 4	E	312	319	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	365	368	first strand
Strand 2	E	374	379	anti-parallel
Strand 3	E	390	393	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	400	403	first strand
Strand 2	E	408	412	anti-parallel
Strand 3	E	415	419	anti-parallel
Strand 4	E	439	440	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	447	450	first strand
Strand 2	E	454	459	anti-parallel
Strand 3	E	462	467	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	488	493	first strand
Strand 2	E	497	502	anti-parallel
Strand 3	E	507	511	anti-parallel
Strand 4	E	517	521	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	528	533	first strand
Strand 2	E	540	544	anti-parallel
Strand 3	E	548	553	anti-parallel
Strand 4	E	558	561	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	571	574	first strand
Strand 2	E	581	585	anti-parallel
Strand 3	E	589	596	anti-parallel
Strand 4	E	604	607	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	571	574	first strand
Strand 2	E	581	585	anti-parallel
Strand 3	E	589	596	anti-parallel
Strand 4	E	626	627	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	633	638	first strand
Strand 2	E	641	646	anti-parallel
Strand 3	E	650	652	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HME

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HME