Analysis of interatomic Contacts of Structural Units in PDB entry:
8HMG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HMG entry

There are 9 chains in PDB entry 8HMG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 89	MET 375
B	SER 86	MET 375
C	SER 86	PRO 374
D	SER 86	MET 375
E	SER 86	MET 375
F	ASP 87	MET 375
G	LYS 89	MET 375
H	SER 86	PRO 374
I	SER 86	MET 375

There are129 helices in PDB entry 8HMG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	89	96	Right-handed alpha
Helix 2	AA2	A	105	117	Right-handed alpha
Helix 3	AA3	A	130	135	Right-handed 310
Helix 4	AA4	A	154	167	Right-handed alpha
Helix 5	AA5	A	168	171	Right-handed 310
Helix 6	AA6	A	203	215	Right-handed alpha
Helix 7	AA7	A	216	218	Right-handed 310
Helix 8	AA8	A	226	240	Right-handed alpha
Helix 9	AA9	A	267	280	Right-handed alpha
Helix 10	AB1	A	281	283	Right-handed 310
Helix 11	AB2	A	297	306	Right-handed alpha
Helix 12	AB3	A	320	326	Right-handed alpha
Helix 13	AB4	A	329	343	Right-handed alpha
Helix 14	AB5	A	344	355	Right-handed alpha
Helix 15	AB6	B	87	96	Right-handed alpha
Helix 16	AB7	B	105	117	Right-handed alpha
Helix 17	AB8	B	130	135	Right-handed 310
Helix 18	AB9	B	154	167	Right-handed alpha
Helix 19	AC1	B	168	171	Right-handed 310
Helix 20	AC2	B	203	215	Right-handed alpha
Helix 21	AC3	B	216	218	Right-handed 310
Helix 22	AC4	B	226	240	Right-handed alpha
Helix 23	AC5	B	267	280	Right-handed alpha
Helix 24	AC6	B	281	283	Right-handed 310
Helix 25	AC7	B	297	306	Right-handed alpha
Helix 26	AC8	B	320	326	Right-handed alpha
Helix 27	AC9	B	329	343	Right-handed alpha
Helix 28	AD1	B	344	355	Right-handed alpha
Helix 29	AD2	C	87	96	Right-handed alpha
Helix 30	AD3	C	105	117	Right-handed alpha
Helix 31	AD4	C	130	135	Right-handed 310
Helix 32	AD5	C	154	167	Right-handed alpha
Helix 33	AD6	C	168	171	Right-handed 310
Helix 34	AD7	C	203	215	Right-handed alpha
Helix 35	AD8	C	216	218	Right-handed 310
Helix 36	AD9	C	226	240	Right-handed alpha
Helix 37	AE1	C	267	280	Right-handed alpha
Helix 38	AE2	C	281	283	Right-handed 310
Helix 39	AE3	C	297	306	Right-handed alpha
Helix 40	AE4	C	320	326	Right-handed alpha
Helix 41	AE5	C	329	343	Right-handed alpha
Helix 42	AE6	C	344	355	Right-handed alpha
Helix 43	AE7	D	87	96	Right-handed alpha
Helix 44	AE8	D	105	117	Right-handed alpha
Helix 45	AE9	D	130	135	Right-handed 310
Helix 46	AF1	D	154	167	Right-handed alpha
Helix 47	AF2	D	168	171	Right-handed 310
Helix 48	AF3	D	203	215	Right-handed alpha
Helix 49	AF4	D	216	218	Right-handed 310
Helix 50	AF5	D	226	240	Right-handed alpha
Helix 51	AF6	D	267	280	Right-handed alpha
Helix 52	AF7	D	281	283	Right-handed 310
Helix 53	AF8	D	297	306	Right-handed alpha
Helix 54	AF9	D	320	326	Right-handed alpha
Helix 55	AG1	D	329	343	Right-handed alpha
Helix 56	AG2	D	344	355	Right-handed alpha
Helix 57	AG3	E	87	96	Right-handed alpha
Helix 58	AG4	E	105	117	Right-handed alpha
Helix 59	AG5	E	130	135	Right-handed 310
Helix 60	AG6	E	154	167	Right-handed alpha
Helix 61	AG7	E	168	171	Right-handed 310
Helix 62	AG8	E	195	199	Right-handed 310
Helix 63	AG9	E	203	215	Right-handed alpha
Helix 64	AH1	E	216	218	Right-handed 310
Helix 65	AH2	E	226	240	Right-handed alpha
Helix 66	AH3	E	267	280	Right-handed alpha
Helix 67	AH4	E	281	283	Right-handed 310
Helix 68	AH5	E	297	306	Right-handed alpha
Helix 69	AH6	E	320	326	Right-handed alpha
Helix 70	AH7	E	329	343	Right-handed alpha
Helix 71	AH8	E	344	355	Right-handed alpha
Helix 72	AH9	F	88	96	Right-handed alpha
Helix 73	AI1	F	105	117	Right-handed alpha
Helix 74	AI2	F	130	135	Right-handed 310
Helix 75	AI3	F	154	167	Right-handed alpha
Helix 76	AI4	F	168	171	Right-handed 310
Helix 77	AI5	F	203	215	Right-handed alpha
Helix 78	AI6	F	216	218	Right-handed 310
Helix 79	AI7	F	226	240	Right-handed alpha
Helix 80	AI8	F	267	280	Right-handed alpha
Helix 81	AI9	F	281	283	Right-handed 310
Helix 82	AJ1	F	297	306	Right-handed alpha
Helix 83	AJ2	F	320	326	Right-handed alpha
Helix 84	AJ3	F	329	343	Right-handed alpha
Helix 85	AJ4	F	344	355	Right-handed alpha
Helix 86	AJ5	G	90	96	Right-handed alpha
Helix 87	AJ6	G	105	117	Right-handed alpha
Helix 88	AJ7	G	130	135	Right-handed 310
Helix 89	AJ8	G	154	167	Right-handed alpha
Helix 90	AJ9	G	168	171	Right-handed 310
Helix 91	AK1	G	195	199	Right-handed 310
Helix 92	AK2	G	203	215	Right-handed alpha
Helix 93	AK3	G	216	218	Right-handed 310
Helix 94	AK4	G	226	240	Right-handed alpha
Helix 95	AK5	G	267	280	Right-handed alpha
Helix 96	AK6	G	281	283	Right-handed 310
Helix 97	AK7	G	297	306	Right-handed alpha
Helix 98	AK8	G	320	326	Right-handed alpha
Helix 99	AK9	G	329	343	Right-handed alpha
Helix 100	AL1	G	344	355	Right-handed alpha
Helix 101	AL2	H	87	96	Right-handed alpha
Helix 102	AL3	H	105	117	Right-handed alpha
Helix 103	AL4	H	130	135	Right-handed 310
Helix 104	AL5	H	154	167	Right-handed alpha
Helix 105	AL6	H	168	171	Right-handed 310
Helix 106	AL7	H	195	199	Right-handed 310
Helix 107	AL8	H	203	215	Right-handed alpha
Helix 108	AL9	H	216	218	Right-handed 310
Helix 109	AM1	H	226	240	Right-handed alpha
Helix 110	AM2	H	267	280	Right-handed alpha
Helix 111	AM3	H	281	283	Right-handed 310
Helix 112	AM4	H	297	306	Right-handed alpha
Helix 113	AM5	H	320	326	Right-handed alpha
Helix 114	AM6	H	329	343	Right-handed alpha
Helix 115	AM7	H	344	355	Right-handed alpha
Helix 116	AM8	I	87	96	Right-handed alpha
Helix 117	AM9	I	105	117	Right-handed alpha
Helix 118	AN1	I	130	135	Right-handed 310
Helix 119	AN2	I	154	167	Right-handed alpha
Helix 120	AN3	I	168	171	Right-handed 310
Helix 121	AN4	I	203	215	Right-handed alpha
Helix 122	AN5	I	216	218	Right-handed 310
Helix 123	AN6	I	226	240	Right-handed alpha
Helix 124	AN7	I	267	280	Right-handed alpha
Helix 125	AN8	I	281	283	Right-handed 310
Helix 126	AN9	I	297	306	Right-handed alpha
Helix 127	AO1	I	320	326	Right-handed alpha
Helix 128	AO2	I	329	343	Right-handed alpha
Helix 129	AO3	I	344	355	Right-handed alpha

There are 18 sheets in PDB entry 8HMG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	193	first strand
Strand 2	A	178	181	anti-parallel
Strand 3	A	122	128	parallel
Strand 4	A	245	251	parallel
Strand 5	A	285	291	parallel
Strand 6	A	315	319	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	176	first strand
Strand 2	A	201	202	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	193	first strand
Strand 2	B	178	181	anti-parallel
Strand 3	B	122	128	parallel
Strand 4	B	245	251	parallel
Strand 5	B	285	291	parallel
Strand 6	B	315	319	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	176	first strand
Strand 2	B	201	202	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	193	first strand
Strand 2	C	178	181	anti-parallel
Strand 3	C	122	128	parallel
Strand 4	C	245	251	parallel
Strand 5	C	285	291	parallel
Strand 6	C	315	319	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	176	first strand
Strand 2	C	201	202	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	193	first strand
Strand 2	D	178	181	anti-parallel
Strand 3	D	122	128	parallel
Strand 4	D	245	251	parallel
Strand 5	D	285	291	parallel
Strand 6	D	315	319	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	176	first strand
Strand 2	D	201	202	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	193	first strand
Strand 2	E	178	181	anti-parallel
Strand 3	E	122	128	parallel
Strand 4	E	245	251	parallel
Strand 5	E	285	291	parallel
Strand 6	E	315	319	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	175	176	first strand
Strand 2	E	201	202	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	192	193	first strand
Strand 2	F	178	181	anti-parallel
Strand 3	F	122	128	parallel
Strand 4	F	245	251	parallel
Strand 5	F	285	291	parallel
Strand 6	F	315	319	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	175	176	first strand
Strand 2	F	201	202	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	192	193	first strand
Strand 2	G	178	181	anti-parallel
Strand 3	G	122	128	parallel
Strand 4	G	245	251	parallel
Strand 5	G	285	291	parallel
Strand 6	G	315	319	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	175	176	first strand
Strand 2	G	201	202	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	192	193	first strand
Strand 2	H	178	181	anti-parallel
Strand 3	H	122	128	parallel
Strand 4	H	245	251	parallel
Strand 5	H	285	291	parallel
Strand 6	H	315	319	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	175	176	first strand
Strand 2	H	201	202	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	192	193	first strand
Strand 2	I	178	181	anti-parallel
Strand 3	I	122	128	parallel
Strand 4	I	245	251	parallel
Strand 5	I	285	291	parallel
Strand 6	I	315	319	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	175	176	first strand
Strand 2	I	201	202	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HMG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HMG