Analysis of interatomic Contacts of Structural Units in PDB entry:
8HMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HMH entry

There are 2 chains in PDB entry 8HMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 TYR 103PRO 374
A
 TYR 103PRO 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8HMH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
105 116Right-handed alpha
Helix 2
AA2
B
130 135Right-handed 310
Helix 3
AA3
B
154 168Right-handed alpha
Helix 4
AA4
B
169 171Right-handed 310
Helix 5
AA5
B
195 199Right-handed 310
Helix 6
AA6
B
203 215Right-handed alpha
Helix 7
AA7
B
216 218Right-handed 310
Helix 8
AA8
B
226 240Right-handed alpha
Helix 9
AA9
B
267 281Right-handed alpha
Helix 10
AB1
B
297 301Right-handed 310
Helix 11
AB2
B
320 325Right-handed alpha
Helix 12
AB3
B
329 343Right-handed alpha
Helix 13
AB4
B
344 355Right-handed alpha
Helix 14
AB5
A
105 116Right-handed alpha
Helix 15
AB6
A
130 135Right-handed 310
Helix 16
AB7
A
154 167Right-handed alpha
Helix 17
AB8
A
168 171Right-handed 310
Helix 18
AB9
A
195 199Right-handed 310
Helix 19
AC1
A
203 215Right-handed alpha
Helix 20
AC2
A
216 218Right-handed 310
Helix 21
AC3
A
226 240Right-handed alpha
Helix 22
AC4
A
267 281Right-handed alpha
Helix 23
AC5
A
299 307Right-handed alpha
Helix 24
AC6
A
320 326Right-handed alpha
Helix 25
AC7
A
329 343Right-handed alpha
Helix 26
AC8
A
344 355Right-handed alpha
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There are 4 sheets in PDB entry 8HMH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 193first strand
Strand 2
B
178 181anti-parallel
Strand 3
B
122 128parallel
Strand 4
B
245 251parallel
Strand 5
B
285 291parallel
Strand 6
B
315 319parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 176first strand
Strand 2
B
201 202anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
178 181anti-parallel
Strand 3
A
122 128parallel
Strand 4
A
245 251parallel
Strand 5
A
285 291parallel
Strand 6
A
315 319parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
201 202anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il