Analysis of interatomic Contacts of Structural Units in PDB entry:
8HMO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HMO entry

There are 6 chains in PDB entry 8HMO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 205
B	MET 1	LYS 205
C	MET 1	ASN 203
D	MET 1	LEU 201
E	MET 1	LYS 205
F	MET 1	LYS 205

There are 34 helices in PDB entry 8HMO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	24	Right-handed 310
Helix 2	AA2	A	67	70	Right-handed 310
Helix 3	AA3	A	88	94	Right-handed alpha
Helix 4	AA4	A	107	112	Right-handed 310
Helix 5	AA5	A	123	134	Right-handed alpha
Helix 6	AA6	A	152	161	Right-handed alpha
Helix 7	AA7	B	16	24	Right-handed 310
Helix 8	AA8	B	67	70	Right-handed 310
Helix 9	AA9	B	88	94	Right-handed alpha
Helix 10	AB1	B	123	134	Right-handed alpha
Helix 11	AB2	B	152	160	Right-handed alpha
Helix 12	AB3	C	16	20	Right-handed 310
Helix 13	AB4	C	53	57	Right-handed 310
Helix 14	AB5	C	67	70	Right-handed 310
Helix 15	AB6	C	88	92	Right-handed 310
Helix 16	AB7	C	123	134	Right-handed alpha
Helix 17	AB8	C	152	161	Right-handed alpha
Helix 18	AB9	D	16	24	Right-handed 310
Helix 19	AC1	D	67	71	Right-handed alpha
Helix 20	AC2	D	88	93	Right-handed alpha
Helix 21	AC3	D	107	112	Right-handed 310
Helix 22	AC4	D	123	134	Right-handed alpha
Helix 23	AC5	D	152	161	Right-handed alpha
Helix 24	AC6	E	16	24	Right-handed 310
Helix 25	AC7	E	67	70	Right-handed 310
Helix 26	AC8	E	88	93	Right-handed 310
Helix 27	AC9	E	107	112	Right-handed 310
Helix 28	AD1	E	123	134	Right-handed alpha
Helix 29	AD2	E	152	161	Right-handed alpha
Helix 30	AD3	F	16	24	Right-handed 310
Helix 31	AD4	F	89	93	Right-handed 310
Helix 32	AD5	F	107	112	Right-handed 310
Helix 33	AD6	F	123	134	Right-handed alpha
Helix 34	AD7	F	152	159	Right-handed alpha

There are 13 sheets in PDB entry 8HMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	193	201	anti-parallel
Strand 3	A	177	185	anti-parallel
Strand 4	A	72	79	anti-parallel
Strand 5	A	102	106	parallel
Strand 6	A	137	140	parallel
Strand 7	A	164	167	parallel
Strand 8	A	49	51	anti-parallel
Strand 9	A	193	201	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	32	first strand
Strand 2	A	35	43	anti-parallel
Strand 3	B	35	43	anti-parallel
Strand 4	B	26	32	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	193	201	anti-parallel
Strand 3	B	177	185	anti-parallel
Strand 4	B	72	79	anti-parallel
Strand 5	B	102	106	parallel
Strand 6	B	137	140	parallel
Strand 7	B	164	167	parallel
Strand 8	B	49	51	anti-parallel
Strand 9	B	193	201	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	193	201	anti-parallel
Strand 3	C	177	185	anti-parallel
Strand 4	C	72	79	anti-parallel
Strand 5	C	102	106	parallel
Strand 6	C	137	140	parallel
Strand 7	C	164	167	parallel
Strand 8	C	49	51	anti-parallel
Strand 9	C	193	201	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	32	first strand
Strand 2	C	35	43	anti-parallel
Strand 3	D	36	43	anti-parallel
Strand 4	D	26	31	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	87	first strand
Strand 2	C	121	122	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	193	201	anti-parallel
Strand 3	D	177	185	anti-parallel
Strand 4	D	72	79	anti-parallel
Strand 5	D	102	106	parallel
Strand 6	D	137	140	parallel
Strand 7	D	164	167	parallel
Strand 8	D	49	51	anti-parallel
Strand 9	D	193	201	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	87	first strand
Strand 2	D	121	122	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	5	first strand
Strand 2	E	193	201	anti-parallel
Strand 3	E	177	185	anti-parallel
Strand 4	E	72	79	anti-parallel
Strand 5	E	102	106	parallel
Strand 6	E	137	140	parallel
Strand 7	E	164	167	parallel
Strand 8	E	49	51	anti-parallel
Strand 9	E	193	201	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	32	first strand
Strand 2	E	35	43	anti-parallel
Strand 3	F	35	43	anti-parallel
Strand 4	F	26	32	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	87	first strand
Strand 2	E	121	122	parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	5	first strand
Strand 2	F	193	201	anti-parallel
Strand 3	F	177	185	anti-parallel
Strand 4	F	72	79	anti-parallel
Strand 5	F	102	106	parallel
Strand 6	F	137	140	parallel
Strand 7	F	164	167	parallel
Strand 8	F	49	51	anti-parallel
Strand 9	F	193	201	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	87	first strand
Strand 2	F	121	122	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HMO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HMO