Analysis of interatomic Contacts of Structural Units in PDB entry:
8HMQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HMQ entry

There are 3 chains in PDB entry 8HMQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 13	PRO 531
B	ILE 13	PRO 531
C	ILE 13	GLU 397

There are 88 helices in PDB entry 8HMQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	22	Right-handed alpha
Helix 2	AA2	A	25	32	Right-handed alpha
Helix 3	AA3	A	57	68	Right-handed alpha
Helix 4	AA4	A	80	97	Right-handed alpha
Helix 5	AA5	A	222	235	Right-handed alpha
Helix 6	AA6	A	247	259	Right-handed alpha
Helix 7	AA7	A	273	279	Right-handed alpha
Helix 8	AA8	A	279	287	Right-handed alpha
Helix 9	AA9	A	294	301	Right-handed alpha
Helix 10	AB1	A	302	304	Right-handed 310
Helix 11	AB2	A	305	321	Right-handed alpha
Helix 12	AB3	A	331	336	Right-handed 310
Helix 13	AB4	A	341	355	Right-handed alpha
Helix 14	AB5	A	362	367	Right-handed alpha
Helix 15	AB6	A	370	388	Right-handed alpha
Helix 16	AB7	A	390	401	Right-handed alpha
Helix 17	AB8	A	407	423	Right-handed alpha
Helix 18	AB9	A	435	443	Right-handed alpha
Helix 19	AC1	A	456	463	Right-handed alpha
Helix 20	AC2	A	464	466	Right-handed 310
Helix 21	AC3	A	481	500	Right-handed alpha
Helix 22	AC4	B	17	22	Right-handed alpha
Helix 23	AC5	B	25	32	Right-handed alpha
Helix 24	AC6	B	57	68	Right-handed alpha
Helix 25	AC7	B	80	97	Right-handed alpha
Helix 26	AC8	B	145	149	Right-handed 310
Helix 27	AC9	B	163	168	Right-handed alpha
Helix 28	AD1	B	222	235	Right-handed alpha
Helix 29	AD2	B	247	259	Right-handed alpha
Helix 30	AD3	B	273	279	Right-handed alpha
Helix 31	AD4	B	279	287	Right-handed alpha
Helix 32	AD5	B	294	301	Right-handed alpha
Helix 33	AD6	B	302	304	Right-handed 310
Helix 34	AD7	B	305	321	Right-handed alpha
Helix 35	AD8	B	331	336	Right-handed 310
Helix 36	AD9	B	341	355	Right-handed alpha
Helix 37	AE1	B	362	367	Right-handed alpha
Helix 38	AE2	B	370	389	Right-handed alpha
Helix 39	AE3	B	390	401	Right-handed alpha
Helix 40	AE4	B	407	423	Right-handed alpha
Helix 41	AE5	B	435	443	Right-handed alpha
Helix 42	AE6	B	456	463	Right-handed alpha
Helix 43	AE7	B	464	466	Right-handed 310
Helix 44	AE8	B	481	500	Right-handed alpha
Helix 45	AE9	C	17	22	Right-handed alpha
Helix 46	AF1	C	25	32	Right-handed alpha
Helix 47	AF2	C	57	68	Right-handed alpha
Helix 48	AF3	C	80	97	Right-handed alpha
Helix 49	AF4	C	145	149	Right-handed 310
Helix 50	AF5	C	222	235	Right-handed alpha
Helix 51	AF6	C	247	259	Right-handed alpha
Helix 52	AF7	C	273	279	Right-handed alpha
Helix 53	AF8	C	279	287	Right-handed alpha
Helix 54	AF9	C	294	301	Right-handed alpha
Helix 55	AG1	C	302	304	Right-handed 310
Helix 56	AG2	C	305	321	Right-handed alpha
Helix 57	AG3	C	331	336	Right-handed 310
Helix 58	AG4	C	341	355	Right-handed alpha
Helix 59	AG5	C	370	389	Right-handed alpha
Helix 60	AG6	C	390	401	Right-handed alpha
Helix 61	AG7	C	407	423	Right-handed alpha
Helix 62	AG8	C	435	443	Right-handed alpha
Helix 63	AG9	C	456	463	Right-handed alpha
Helix 64	AH1	C	464	466	Right-handed 310
Helix 65	AH2	C	481	500	Right-handed alpha
Helix 66	AH3	D	17	22	Right-handed alpha
Helix 67	AH4	D	25	32	Right-handed alpha
Helix 68	AH5	D	57	68	Right-handed alpha
Helix 69	AH6	D	80	97	Right-handed alpha
Helix 70	AH7	D	123	127	Right-handed 310
Helix 71	AH8	D	145	149	Right-handed 310
Helix 72	AH9	D	222	235	Right-handed alpha
Helix 73	AI1	D	247	259	Right-handed alpha
Helix 74	AI2	D	273	279	Right-handed alpha
Helix 75	AI3	D	279	287	Right-handed alpha
Helix 76	AI4	D	294	301	Right-handed alpha
Helix 77	AI5	D	302	304	Right-handed 310
Helix 78	AI6	D	305	321	Right-handed alpha
Helix 79	AI7	D	331	336	Right-handed 310
Helix 80	AI8	D	341	355	Right-handed alpha
Helix 81	AI9	D	362	367	Right-handed alpha
Helix 82	AJ1	D	370	389	Right-handed alpha
Helix 83	AJ2	D	390	401	Right-handed alpha
Helix 84	AJ3	D	407	423	Right-handed alpha
Helix 85	AJ4	D	435	443	Right-handed alpha
Helix 86	AJ5	D	456	463	Right-handed alpha
Helix 87	AJ6	D	464	466	Right-handed 310
Helix 88	AJ7	D	481	500	Right-handed alpha

There are 15 sheets in PDB entry 8HMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	50	first strand
Strand 2	A	71	75	parallel
Strand 3	A	109	113	parallel
Strand 4	A	239	242	parallel
Strand 5	A	266	271	parallel
Strand 6	A	289	293	parallel
Strand 7	A	324	327	parallel
Strand 8	A	358	361	parallel
Strand 9	A	46	50	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	A	208	210	anti-parallel
Strand 3	A	174	176	anti-parallel
Strand 4	A	181	184	anti-parallel
Strand 5	A	194	199	anti-parallel
Strand 6	A	139	141	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	473	first strand
Strand 2	A	450	454	parallel
Strand 3	A	428	431	parallel
Strand 4	A	508	513	parallel
Strand 5	A	524	529	anti-parallel
Strand 6	D	522	529	anti-parallel
Strand 7	D	508	514	anti-parallel
Strand 8	D	428	431	parallel
Strand 9	D	450	454	parallel
Strand 10	D	469	473	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	50	first strand
Strand 2	B	71	75	parallel
Strand 3	B	109	113	parallel
Strand 4	B	239	242	parallel
Strand 5	B	266	271	parallel
Strand 6	B	289	293	parallel
Strand 7	B	324	327	parallel
Strand 8	B	358	361	parallel
Strand 9	B	46	50	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	120	first strand
Strand 2	B	208	210	anti-parallel
Strand 3	B	175	176	anti-parallel
Strand 4	B	181	187	anti-parallel
Strand 5	B	192	197	anti-parallel
Strand 6	B	139	143	anti-parallel
Strand 7	B	156	158	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	134	first strand
Strand 2	B	201	203	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	473	first strand
Strand 2	B	450	454	parallel
Strand 3	B	428	431	parallel
Strand 4	B	508	514	parallel
Strand 5	B	522	529	anti-parallel
Strand 6	C	524	529	anti-parallel
Strand 7	C	508	513	anti-parallel
Strand 8	C	427	431	parallel
Strand 9	C	450	454	parallel
Strand 10	C	469	473	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	50	first strand
Strand 2	C	71	75	parallel
Strand 3	C	109	113	parallel
Strand 4	C	239	242	parallel
Strand 5	C	266	271	parallel
Strand 6	C	289	293	parallel
Strand 7	C	324	327	parallel
Strand 8	C	358	361	parallel
Strand 9	C	46	50	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	120	first strand
Strand 2	C	208	210	anti-parallel
Strand 3	C	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	134	first strand
Strand 2	C	201	203	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	143	first strand
Strand 2	C	156	158	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	50	first strand
Strand 2	D	71	75	parallel
Strand 3	D	109	113	parallel
Strand 4	D	239	242	parallel
Strand 5	D	266	271	parallel
Strand 6	D	289	293	parallel
Strand 7	D	324	327	parallel
Strand 8	D	358	361	parallel
Strand 9	D	46	50	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	120	first strand
Strand 2	D	208	209	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	134	first strand
Strand 2	D	201	203	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	158	first strand
Strand 2	D	139	143	parallel
Strand 3	D	193	196	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HMQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HMQ