Analysis of interatomic Contacts of Structural Units in PDB entry:
8HMT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HMT entry

There are 4 chains in PDB entry 8HMT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 117	GLN 389
B	LEU 117	ALA 388
C	LEU 117	GLN 389
D	LEU 117	GLN 389

There are 45 helices in PDB entry 8HMT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	122	124	Right-handed 310
Helix 2	AA2	A	169	183	Right-handed alpha
Helix 3	AA3	A	212	220	Right-handed alpha
Helix 4	AA4	A	225	246	Right-handed alpha
Helix 5	AA5	A	254	256	Right-handed 310
Helix 6	AA6	A	293	297	Right-handed 310
Helix 7	AA7	A	298	305	Right-handed alpha
Helix 8	AA8	A	308	325	Right-handed alpha
Helix 9	AA9	A	335	346	Right-handed alpha
Helix 10	AB1	A	357	368	Right-handed alpha
Helix 11	AB2	A	371	375	Right-handed 310
Helix 12	AB3	A	377	388	Right-handed alpha
Helix 13	AB4	B	122	124	Right-handed 310
Helix 14	AB5	B	168	183	Right-handed alpha
Helix 15	AB6	B	212	220	Right-handed alpha
Helix 16	AB7	B	225	246	Right-handed alpha
Helix 17	AB8	B	254	256	Right-handed 310
Helix 18	AB9	B	298	305	Right-handed alpha
Helix 19	AC1	B	309	325	Right-handed alpha
Helix 20	AC2	B	335	345	Right-handed alpha
Helix 21	AC3	B	357	368	Right-handed alpha
Helix 22	AC4	B	371	375	Right-handed 310
Helix 23	AC5	B	377	387	Right-handed alpha
Helix 24	AC6	C	122	124	Right-handed 310
Helix 25	AC7	C	171	183	Right-handed alpha
Helix 26	AC8	C	212	220	Right-handed alpha
Helix 27	AC9	C	225	246	Right-handed alpha
Helix 28	AD1	C	254	256	Right-handed 310
Helix 29	AD2	C	298	305	Right-handed alpha
Helix 30	AD3	C	308	325	Right-handed alpha
Helix 31	AD4	C	335	345	Right-handed alpha
Helix 32	AD5	C	357	368	Right-handed alpha
Helix 33	AD6	C	377	386	Right-handed alpha
Helix 34	AD7	D	122	124	Right-handed 310
Helix 35	AD8	D	170	183	Right-handed alpha
Helix 36	AD9	D	212	220	Right-handed alpha
Helix 37	AE1	D	225	246	Right-handed alpha
Helix 38	AE2	D	254	256	Right-handed 310
Helix 39	AE3	D	293	297	Right-handed 310
Helix 40	AE4	D	298	305	Right-handed alpha
Helix 41	AE5	D	309	325	Right-handed alpha
Helix 42	AE6	D	335	345	Right-handed alpha
Helix 43	AE7	D	357	368	Right-handed alpha
Helix 44	AE8	D	371	375	Right-handed 310
Helix 45	AE9	D	377	387	Right-handed alpha

There are 16 sheets in PDB entry 8HMT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	A	192	196	parallel
Strand 3	A	202	206	anti-parallel
Strand 4	A	152	159	anti-parallel
Strand 5	A	139	146	anti-parallel
Strand 6	A	126	131	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	275	276	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	260	first strand
Strand 2	A	266	268	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	306	307	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	120	first strand
Strand 2	B	192	196	parallel
Strand 3	B	202	206	anti-parallel
Strand 4	B	152	159	anti-parallel
Strand 5	B	140	146	anti-parallel
Strand 6	B	126	131	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	249	first strand
Strand 2	B	275	276	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	260	first strand
Strand 2	B	266	268	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	306	308	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	120	first strand
Strand 2	C	192	196	parallel
Strand 3	C	202	206	anti-parallel
Strand 4	C	152	159	anti-parallel
Strand 5	C	139	146	anti-parallel
Strand 6	C	126	133	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	249	first strand
Strand 2	C	275	276	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	260	first strand
Strand 2	C	266	268	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	285	first strand
Strand 2	C	306	307	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	121	first strand
Strand 2	D	192	196	parallel
Strand 3	D	202	206	anti-parallel
Strand 4	D	152	159	anti-parallel
Strand 5	D	139	146	anti-parallel
Strand 6	D	126	133	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	249	first strand
Strand 2	D	275	276	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	260	first strand
Strand 2	D	266	268	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	285	first strand
Strand 2	D	306	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HMT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HMT