Analysis of interatomic Contacts of Structural Units in PDB entry:
8HMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HMY entry

There are 6 chains in PDB entry 8HMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 14LEU 465
B
 MET 1SER 308
T
 G 0 G 89
C
 ALA 8HIS 526
D
 MET 40GLN 165
E
 PRO 11MET 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8HMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 63Right-handed alpha
Helix 2
AA2
A
100 118Right-handed alpha
Helix 3
AA3
A
124 133Right-handed alpha
Helix 4
AA4
A
300 309Right-handed alpha
Helix 5
AA5
A
324 336Right-handed alpha
Helix 6
AA6
A
338 351Right-handed alpha
Helix 7
AA7
A
360 363Right-handed 310
Helix 8
AA8
A
401 414Right-handed alpha
Helix 9
AA9
A
436 443Right-handed 310
Helix 10
AB1
B
15 26Right-handed alpha
Helix 11
AB2
B
53 63Right-handed alpha
Helix 12
AB3
B
79 112Right-handed alpha
Helix 13
AB4
B
112 134Right-handed alpha
Helix 14
AB5
B
214 230Right-handed alpha
Helix 15
AB6
B
271 285Right-handed alpha
Helix 16
AB7
C
19 28Right-handed alpha
Helix 17
AB8
C
49 66Right-handed alpha
Helix 18
AB9
C
96 101Right-handed 310
Helix 19
AC1
C
113 123Right-handed alpha
Helix 20
AC2
C
136 145Right-handed alpha
Helix 21
AC3
C
151 163Right-handed alpha
Helix 22
AC4
C
172 176Right-handed 310
Helix 23
AC5
C
438 442Right-handed 310
Helix 24
AC6
C
455 459Right-handed 310
Helix 25
AC7
C
484 496Right-handed alpha
Helix 26
AC8
D
43 50Right-handed alpha
Helix 27
AC9
D
56 72Right-handed alpha
Helix 28
AD1
D
115 131Right-handed alpha
Helix 29
AD2
E
89 110Right-handed alpha
Helix 30
AD3
E
126 141Right-handed alpha
Helix 31
AD4
E
192 195Right-handed 310
Helix 32
AD5
E
196 218Right-handed alpha
Helix 33
AD6
E
218 225Right-handed alpha
Helix 34
AD7
E
236 249Right-handed alpha
Helix 35
AD8
E
259 270Right-handed alpha
Helix 36
AD9
E
289 307Right-handed alpha
Helix 37
AE1
E
308 311Right-handed 310
Helix 38
AE2
E
322 324Right-handed 310
Helix 39
AE3
E
358 362Right-handed 310
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There are 15 sheets in PDB entry 8HMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
297 299anti-parallel
Strand 3
A
48 51anti-parallel
Strand 4
A
40 45anti-parallel
Strand 5
A
314 318parallel
Strand 6
A
321 322anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 261first strand
Strand 2
A
284 288anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 358first strand
Strand 2
A
366 369anti-parallel
Strand 3
A
378 388anti-parallel
Strand 4
A
417 425parallel
Strand 5
A
444 453anti-parallel
Strand 6
C
509 517anti-parallel
Strand 7
C
500 506anti-parallel
Strand 8
C
471 477parallel
Strand 9
C
448 453anti-parallel
Strand 10
C
167 170anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
50 52anti-parallel
Strand 3
B
10 13anti-parallel
Strand 4
B
2 7anti-parallel
Strand 5
B
66 70parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 187first strand
Strand 2
C
70 73anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 197first strand
Strand 2
C
10 12anti-parallel
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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 236first strand
Strand 2
B
244 247anti-parallel
Strand 3
B
258 262anti-parallel
Strand 4
B
287 293parallel
Strand 5
B
299 306anti-parallel
Strand 6
D
150 156anti-parallel
Strand 7
D
138 144anti-parallel
Strand 8
D
103 109parallel
Strand 9
D
89 95anti-parallel
Strand 10
D
77 84anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 270first strand
Strand 2
D
113 114anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 79first strand
Strand 2
C
126 127parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 83first strand
Strand 2
C
88 90anti-parallel
Strand 3
C
109 112anti-parallel
Strand 4
C
104 106anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 130first strand
Strand 2
C
133 134anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 17first strand
Strand 2
E
71 76anti-parallel
Strand 3
E
33 40anti-parallel
Strand 4
E
54 57anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
47 48first strand
Strand 2
E
43 44anti-parallel
Strand 3
E
62 67anti-parallel
Strand 4
E
21 27anti-parallel
Strand 5
E
79 85anti-parallel
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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
184 187first strand
Strand 2
E
162 167anti-parallel
Strand 3
E
146 149anti-parallel
Strand 4
E
226 229parallel
Strand 5
E
116 120parallel
Strand 6
E
253 257parallel
Strand 7
E
275 279parallel
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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
315 320first strand
Strand 2
E
398 403anti-parallel
Strand 3
E
385 393anti-parallel
Strand 4
E
364 368anti-parallel
Strand 5
E
413 420anti-parallel
Strand 6
E
325 328parallel
Strand 7
E
353 354anti-parallel
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