Analysis of interatomic Contacts of Structural Units in PDB entry:
8HMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HMZ entry

There are 7 chains in PDB entry 8HMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 15LEU 465
B
 MET 1SER 308
C
 ALA 8HIS 526
D
 MET 40GLN 165
5
 G 0 C 51
3
 A 53 G 89
E
 PRO 11MET 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8HMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 63Right-handed alpha
Helix 2
AA2
A
83 87Right-handed 310
Helix 3
AA3
A
100 118Right-handed alpha
Helix 4
AA4
A
121 133Right-handed alpha
Helix 5
AA5
A
300 309Right-handed alpha
Helix 6
AA6
A
326 336Right-handed alpha
Helix 7
AA7
A
338 351Right-handed alpha
Helix 8
AA8
A
402 414Right-handed alpha
Helix 9
AA9
A
432 442Right-handed 310
Helix 10
AB1
B
15 27Right-handed alpha
Helix 11
AB2
B
53 63Right-handed alpha
Helix 12
AB3
B
79 96Right-handed alpha
Helix 13
AB4
B
96 111Right-handed alpha
Helix 14
AB5
B
112 132Right-handed alpha
Helix 15
AB6
B
214 230Right-handed alpha
Helix 16
AB7
B
271 284Right-handed alpha
Helix 17
AB8
C
19 28Right-handed alpha
Helix 18
AB9
C
49 61Right-handed alpha
Helix 19
AC1
C
61 66Right-handed alpha
Helix 20
AC2
C
96 101Right-handed 310
Helix 21
AC3
C
113 124Right-handed alpha
Helix 22
AC4
C
136 145Right-handed alpha
Helix 23
AC5
C
151 163Right-handed alpha
Helix 24
AC6
C
172 176Right-handed 310
Helix 25
AC7
C
438 442Right-handed 310
Helix 26
AC8
C
454 458Right-handed 310
Helix 27
AC9
C
484 496Right-handed alpha
Helix 28
AD1
D
43 52Right-handed alpha
Helix 29
AD2
D
57 72Right-handed alpha
Helix 30
AD3
D
116 131Right-handed alpha
Helix 31
AD4
E
89 108Right-handed alpha
Helix 32
AD5
E
126 141Right-handed alpha
Helix 33
AD6
E
196 218Right-handed alpha
Helix 34
AD7
E
218 225Right-handed alpha
Helix 35
AD8
E
237 249Right-handed alpha
Helix 36
AD9
E
259 267Right-handed alpha
Helix 37
AE1
E
289 306Right-handed alpha
Helix 38
AE2
E
307 311Right-handed 310
Helix 39
AE3
E
358 362Right-handed 310
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There are 15 sheets in PDB entry 8HMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
297 299anti-parallel
Strand 3
A
48 51anti-parallel
Strand 4
A
40 45anti-parallel
Strand 5
A
314 318parallel
Strand 6
A
321 322anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 261first strand
Strand 2
A
284 288anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 358first strand
Strand 2
A
366 369anti-parallel
Strand 3
A
378 388anti-parallel
Strand 4
A
417 425parallel
Strand 5
A
444 452anti-parallel
Strand 6
C
509 518anti-parallel
Strand 7
C
500 506anti-parallel
Strand 8
C
471 477parallel
Strand 9
C
450 453anti-parallel
Strand 10
C
167 170anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 358first strand
Strand 2
A
366 369anti-parallel
Strand 3
A
378 388anti-parallel
Strand 4
A
417 425parallel
Strand 5
A
444 452anti-parallel
Strand 6
C
428 429parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
10 13anti-parallel
Strand 3
B
4 7anti-parallel
Strand 4
B
68 70parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 187first strand
Strand 2
C
70 73anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 197first strand
Strand 2
C
10 12anti-parallel
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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 236first strand
Strand 2
B
244 247anti-parallel
Strand 3
B
258 262anti-parallel
Strand 4
B
287 293parallel
Strand 5
B
299 306anti-parallel
Strand 6
D
150 156anti-parallel
Strand 7
D
138 144anti-parallel
Strand 8
D
103 109parallel
Strand 9
D
89 95anti-parallel
Strand 10
D
77 84anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 270first strand
Strand 2
D
113 115anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 106first strand
Strand 2
C
109 112anti-parallel
Strand 3
C
88 91anti-parallel
Strand 4
C
78 83anti-parallel
Strand 5
C
126 127parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 17first strand
Strand 2
E
71 77anti-parallel
Strand 3
E
33 40anti-parallel
Strand 4
E
55 57anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
62 67first strand
Strand 2
E
21 26anti-parallel
Strand 3
E
81 85anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
43 44first strand
Strand 2
E
47 48anti-parallel
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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
184 187first strand
Strand 2
E
162 167anti-parallel
Strand 3
E
146 149anti-parallel
Strand 4
E
226 229parallel
Strand 5
E
116 120parallel
Strand 6
E
253 257parallel
Strand 7
E
275 279parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
315 320first strand
Strand 2
E
398 403anti-parallel
Strand 3
E
385 391anti-parallel
Strand 4
E
365 368anti-parallel
Strand 5
E
413 416anti-parallel
Strand 6
E
325 326parallel
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