Analysis of interatomic Contacts of Structural Units in PDB entry:
8HN7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HN7 entry

There are 6 chains in PDB entry 8HN7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	GLU 216
B	GLU 1	LYS 221
E	THR 333	PRO 527
C	SER 3	GLU 216
D	GLU 1	LYS 221
F	THR 333	PRO 527

There are 26 helices in PDB entry 8HN7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	86	Right-handed 310
Helix 2	AA2	A	124	129	Right-handed alpha
Helix 3	AA3	A	186	190	Right-handed alpha
Helix 4	AA4	B	28	32	Right-handed 310
Helix 5	AA5	B	62	65	Right-handed 310
Helix 6	AA6	B	87	91	Right-handed 310
Helix 7	AA7	B	208	211	Right-handed 310
Helix 8	AA8	E	337	343	Right-handed alpha
Helix 9	AA9	E	349	353	Right-handed 310
Helix 10	AB1	E	365	370	Right-handed alpha
Helix 11	AB2	E	405	410	Right-handed 310
Helix 12	AB3	E	416	422	Right-handed alpha
Helix 13	AB4	E	438	443	Right-handed alpha
Helix 14	AB5	E	502	505	Right-handed 310
Helix 15	AB6	C	82	86	Right-handed 310
Helix 16	AB7	C	124	130	Right-handed alpha
Helix 17	AB8	C	186	190	Right-handed alpha
Helix 18	AB9	D	28	32	Right-handed 310
Helix 19	AC1	D	87	91	Right-handed 310
Helix 20	AC2	D	192	196	Right-handed 310
Helix 21	AC3	F	337	343	Right-handed alpha
Helix 22	AC4	F	349	353	Right-handed 310
Helix 23	AC5	F	365	370	Right-handed alpha
Helix 24	AC6	F	405	410	Right-handed 310
Helix 25	AC7	F	416	422	Right-handed alpha
Helix 26	AC8	F	438	443	Right-handed alpha

There are 27 sheets in PDB entry 8HN7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	10	first strand
Strand 2	A	22	28	anti-parallel
Strand 3	A	73	78	anti-parallel
Strand 4	A	65	70	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	16	first strand
Strand 2	A	105	109	parallel
Strand 3	A	88	93	anti-parallel
Strand 4	A	36	41	anti-parallel
Strand 5	A	48	52	anti-parallel
Strand 6	A	56	57	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	121	first strand
Strand 2	A	132	142	anti-parallel
Strand 3	A	176	185	anti-parallel
Strand 4	A	164	166	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	153	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	208	213	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	17	25	anti-parallel
Strand 3	B	78	84	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	114	118	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	33	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	114	118	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	107	110	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	143	152	anti-parallel
Strand 3	B	183	191	anti-parallel
Strand 4	B	170	172	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	143	152	anti-parallel
Strand 3	B	183	191	anti-parallel
Strand 4	B	176	177	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	161	first strand
Strand 2	B	201	207	anti-parallel
Strand 3	B	212	218	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	358	first strand
Strand 2	E	394	403	anti-parallel
Strand 3	E	507	516	anti-parallel
Strand 4	E	431	437	anti-parallel
Strand 5	E	376	380	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	452	454	first strand
Strand 2	E	492	494	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	473	474	first strand
Strand 2	E	488	489	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	10	first strand
Strand 2	C	22	28	anti-parallel
Strand 3	C	73	78	anti-parallel
Strand 4	C	65	70	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	16	first strand
Strand 2	C	105	109	parallel
Strand 3	C	88	93	anti-parallel
Strand 4	C	36	41	anti-parallel
Strand 5	C	48	52	anti-parallel
Strand 6	C	56	57	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	121	first strand
Strand 2	C	132	142	anti-parallel
Strand 3	C	176	185	anti-parallel
Strand 4	C	162	166	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	157	first strand
Strand 2	C	148	153	anti-parallel
Strand 3	C	195	200	anti-parallel
Strand 4	C	208	212	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	114	118	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	114	118	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	107	110	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	131	first strand
Strand 2	D	143	152	anti-parallel
Strand 3	D	183	191	anti-parallel
Strand 4	D	170	172	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	131	first strand
Strand 2	D	143	152	anti-parallel
Strand 3	D	183	191	anti-parallel
Strand 4	D	176	177	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	161	first strand
Strand 2	D	201	207	anti-parallel
Strand 3	D	212	214	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	161	first strand
Strand 2	D	201	207	anti-parallel
Strand 3	D	217	218	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	354	358	first strand
Strand 2	F	394	403	anti-parallel
Strand 3	F	507	516	anti-parallel
Strand 4	F	431	437	anti-parallel
Strand 5	F	376	380	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	452	454	first strand
Strand 2	F	492	494	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	473	474	first strand
Strand 2	F	488	489	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HN7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HN7