Analysis of interatomic Contacts of Structural Units in PDB entry:
8HNC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HNC entry

There is 1 chain in PDB entry 8HNC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 25TYR 651
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 8HNC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 49Right-handed alpha
Helix 2
AA2
A
51 58Right-handed alpha
Helix 3
AA3
A
62 79Right-handed alpha
Helix 4
AA4
A
82 88Right-handed alpha
Helix 5
AA5
A
89 91Right-handed 310
Helix 6
AA6
A
92 113Right-handed alpha
Helix 7
AA7
A
114 117Right-handed 310
Helix 8
AA8
A
121 125Right-handed 310
Helix 9
AA9
A
155 165Right-handed alpha
Helix 10
AB1
A
170 186Right-handed alpha
Helix 11
AB2
A
188 200Right-handed alpha
Helix 12
AB3
A
204 216Right-handed alpha
Helix 13
AB4
A
217 231Right-handed alpha
Helix 14
AB5
A
258 274Right-handed alpha
Helix 15
AB6
A
275 279Right-handed 310
Helix 16
AB7
A
324 334Right-handed alpha
Helix 17
AB8
A
335 366Right-handed alpha
Helix 18
AB9
A
375 400Right-handed alpha
Helix 19
AC1
A
403 426Right-handed alpha
Helix 20
AC2
A
527 550Right-handed alpha
Helix 21
AC3
A
554 563Right-handed alpha
Helix 22
AC4
A
564 566Right-handed 310
Helix 23
AC5
A
567 584Right-handed alpha
Helix 24
AC6
A
586 597Right-handed alpha
Helix 25
AC7
A
617 651Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 8HNC.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 481first strand
Strand 2
A
473 475anti-parallel
Strand 3
A
519 521anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il