Analysis of interatomic Contacts of Structural Units in PDB entry:
8HND


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HND entry

There is 1 chain in PDB entry 8HND (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 26GLN 652
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8HND. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 50Right-handed alpha
Helix 2
AA2
A
51 60Right-handed alpha
Helix 3
AA3
A
62 86Right-handed alpha
Helix 4
AA4
A
92 113Right-handed alpha
Helix 5
AA5
A
114 116Right-handed 310
Helix 6
AA6
A
165 169Right-handed 310
Helix 7
AA7
A
170 186Right-handed alpha
Helix 8
AA8
A
187 199Right-handed alpha
Helix 9
AA9
A
204 217Right-handed alpha
Helix 10
AB1
A
218 231Right-handed alpha
Helix 11
AB2
A
258 274Right-handed alpha
Helix 12
AB3
A
275 277Right-handed 310
Helix 13
AB4
A
325 335Right-handed alpha
Helix 14
AB5
A
335 367Right-handed alpha
Helix 15
AB6
A
370 381Right-handed alpha
Helix 16
AB7
A
381 400Right-handed alpha
Helix 17
AB8
A
403 423Right-handed alpha
Helix 18
AB9
A
424 428Right-handed 310
Helix 19
AC1
A
509 513Right-handed 310
Helix 20
AC2
A
527 550Right-handed alpha
Helix 21
AC3
A
551 562Right-handed alpha
Helix 22
AC4
A
564 566Right-handed 310
Helix 23
AC5
A
567 598Right-handed alpha
Helix 24
AC6
A
617 651Right-handed alpha
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There are 2 sheets in PDB entry 8HND. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 475first strand
Strand 2
A
519 521anti-parallel
Strand 3
A
500 502anti-parallel
Strand 4
A
491 492anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
599 604first strand
Strand 2
A
610 616anti-parallel
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