Analysis of interatomic Contacts of Structural Units in PDB entry:
8HNJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HNJ entry

There are 6 chains in PDB entry 8HNJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 219
B	MET 1	GLY 219
C	MET 1	GLY 219
D	MET 1	GLY 219
E	MET 1	GLY 219
F	MET 1	GLY 219

There are 57 helices in PDB entry 8HNJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	36	Right-handed alpha
Helix 2	AA2	A	46	48	Right-handed 310
Helix 3	AA3	A	49	56	Right-handed alpha
Helix 4	AA4	A	69	74	Right-handed alpha
Helix 5	AA5	A	100	105	Right-handed 310
Helix 6	AA6	A	115	125	Right-handed alpha
Helix 7	AA7	A	135	145	Right-handed alpha
Helix 8	AA8	A	155	166	Right-handed alpha
Helix 9	AA9	A	190	208	Right-handed alpha
Helix 10	AB1	A	208	219	Right-handed alpha
Helix 11	AB2	B	23	36	Right-handed alpha
Helix 12	AB3	B	46	56	Right-handed alpha
Helix 13	AB4	B	69	74	Right-handed alpha
Helix 14	AB5	B	100	105	Right-handed 310
Helix 15	AB6	B	115	125	Right-handed alpha
Helix 16	AB7	B	135	145	Right-handed alpha
Helix 17	AB8	B	155	166	Right-handed alpha
Helix 18	AB9	B	190	208	Right-handed alpha
Helix 19	AC1	B	208	219	Right-handed alpha
Helix 20	AC2	C	23	36	Right-handed alpha
Helix 21	AC3	C	46	56	Right-handed alpha
Helix 22	AC4	C	71	74	Right-handed 310
Helix 23	AC5	C	100	105	Right-handed 310
Helix 24	AC6	C	115	125	Right-handed alpha
Helix 25	AC7	C	135	145	Right-handed alpha
Helix 26	AC8	C	155	165	Right-handed alpha
Helix 27	AC9	C	190	207	Right-handed alpha
Helix 28	AD1	C	208	219	Right-handed alpha
Helix 29	AD2	D	23	37	Right-handed alpha
Helix 30	AD3	D	46	48	Right-handed 310
Helix 31	AD4	D	49	56	Right-handed alpha
Helix 32	AD5	D	69	74	Right-handed alpha
Helix 33	AD6	D	100	105	Right-handed 310
Helix 34	AD7	D	115	125	Right-handed alpha
Helix 35	AD8	D	135	145	Right-handed alpha
Helix 36	AD9	D	155	166	Right-handed alpha
Helix 37	AE1	D	190	207	Right-handed alpha
Helix 38	AE2	D	208	219	Right-handed alpha
Helix 39	AE3	E	23	37	Right-handed alpha
Helix 40	AE4	E	46	48	Right-handed 310
Helix 41	AE5	E	49	56	Right-handed alpha
Helix 42	AE6	E	71	74	Right-handed 310
Helix 43	AE7	E	100	105	Right-handed 310
Helix 44	AE8	E	117	125	Right-handed alpha
Helix 45	AE9	E	135	145	Right-handed alpha
Helix 46	AF1	E	154	165	Right-handed alpha
Helix 47	AF2	E	190	207	Right-handed alpha
Helix 48	AF3	E	208	218	Right-handed alpha
Helix 49	AF4	F	23	37	Right-handed alpha
Helix 50	AF5	F	46	48	Right-handed 310
Helix 51	AF6	F	49	56	Right-handed alpha
Helix 52	AF7	F	100	105	Right-handed 310
Helix 53	AF8	F	115	125	Right-handed alpha
Helix 54	AF9	F	135	145	Right-handed alpha
Helix 55	AG1	F	155	166	Right-handed alpha
Helix 56	AG2	F	190	207	Right-handed alpha
Helix 57	AG3	F	208	219	Right-handed alpha

There are 23 sheets in PDB entry 8HNJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	45	first strand
Strand 2	A	2	7	parallel
Strand 3	A	61	63	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	20	22	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	185	187	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	133	first strand
Strand 2	A	108	112	parallel
Strand 3	A	150	154	parallel
Strand 4	A	83	92	anti-parallel
Strand 5	A	170	182	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	45	first strand
Strand 2	B	2	7	parallel
Strand 3	B	61	67	parallel
Strand 4	B	170	187	anti-parallel
Strand 5	B	76	78	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	45	first strand
Strand 2	B	2	7	parallel
Strand 3	B	61	67	parallel
Strand 4	B	170	187	anti-parallel
Strand 5	B	83	92	anti-parallel
Strand 6	B	150	154	anti-parallel
Strand 7	B	108	112	parallel
Strand 8	B	129	133	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	20	22	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	45	first strand
Strand 2	C	2	7	parallel
Strand 3	C	61	63	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	17	first strand
Strand 2	C	20	22	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	185	187	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	133	first strand
Strand 2	C	108	112	parallel
Strand 3	C	150	154	parallel
Strand 4	C	83	92	anti-parallel
Strand 5	C	170	182	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	45	first strand
Strand 2	D	2	7	parallel
Strand 3	D	61	63	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	10	first strand
Strand 2	D	14	16	anti-parallel
Strand 3	D	21	22	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	185	187	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	133	first strand
Strand 2	D	108	112	parallel
Strand 3	D	150	154	parallel
Strand 4	D	83	92	anti-parallel
Strand 5	D	170	182	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	45	first strand
Strand 2	E	2	7	parallel
Strand 3	E	61	63	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	17	first strand
Strand 2	E	20	22	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	185	187	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	85	first strand
Strand 2	E	180	182	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	130	first strand
Strand 2	E	108	110	parallel
Strand 3	E	150	153	parallel
Strand 4	E	88	92	anti-parallel
Strand 5	E	170	173	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	45	first strand
Strand 2	F	2	7	parallel
Strand 3	F	61	67	parallel
Strand 4	F	170	186	anti-parallel
Strand 5	F	77	78	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	45	first strand
Strand 2	F	2	7	parallel
Strand 3	F	61	67	parallel
Strand 4	F	170	186	anti-parallel
Strand 5	F	83	92	anti-parallel
Strand 6	F	150	154	anti-parallel
Strand 7	F	108	112	parallel
Strand 8	F	129	133	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	17	first strand
Strand 2	F	20	22	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HNJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HNJ