Analysis of interatomic Contacts of Structural Units in PDB entry:
8HNT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HNT entry

There are 3 chains in PDB entry 8HNT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	ARG 1054
B	U 3	U 125
C	MET 1	PHE 88

There are 47 helices in PDB entry 8HNT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	86	Right-handed alpha
Helix 2	AA2	A	99	108	Right-handed alpha
Helix 3	AA3	A	113	127	Right-handed alpha
Helix 4	AA4	A	142	160	Right-handed alpha
Helix 5	AA5	A	166	174	Right-handed alpha
Helix 6	AA6	A	174	179	Right-handed alpha
Helix 7	AA7	A	194	212	Right-handed alpha
Helix 8	AA8	A	218	231	Right-handed alpha
Helix 9	AA9	A	260	274	Right-handed alpha
Helix 10	AB1	A	287	296	Right-handed alpha
Helix 11	AB2	A	306	313	Right-handed alpha
Helix 12	AB3	A	331	337	Right-handed alpha
Helix 13	AB4	A	343	356	Right-handed alpha
Helix 14	AB5	A	368	382	Right-handed alpha
Helix 15	AB6	A	384	392	Right-handed alpha
Helix 16	AB7	A	397	408	Right-handed alpha
Helix 17	AB8	A	418	429	Right-handed alpha
Helix 18	AB9	A	433	442	Right-handed alpha
Helix 19	AC1	A	461	465	Right-handed 310
Helix 20	AC2	A	467	489	Right-handed alpha
Helix 21	AC3	A	505	534	Right-handed alpha
Helix 22	AC4	A	542	555	Right-handed alpha
Helix 23	AC5	A	567	571	Right-handed 310
Helix 24	AC6	A	584	589	Right-handed alpha
Helix 25	AC7	A	592	594	Right-handed 310
Helix 26	AC8	A	601	608	Right-handed alpha
Helix 27	AC9	A	611	616	Right-handed alpha
Helix 28	AD1	A	622	634	Right-handed alpha
Helix 29	AD2	A	638	646	Right-handed alpha
Helix 30	AD3	A	651	661	Right-handed alpha
Helix 31	AD4	A	664	678	Right-handed alpha
Helix 32	AD5	A	692	703	Right-handed alpha
Helix 33	AD6	A	714	725	Right-handed alpha
Helix 34	AD7	A	727	743	Right-handed alpha
Helix 35	AD8	A	769	780	Right-handed alpha
Helix 36	AD9	A	782	791	Right-handed alpha
Helix 37	AE1	A	794	798	Right-handed 310
Helix 38	AE2	A	845	851	Right-handed alpha
Helix 39	AE3	A	858	872	Right-handed alpha
Helix 40	AE4	A	875	881	Right-handed alpha
Helix 41	AE5	A	938	944	Right-handed alpha
Helix 42	AE6	A	956	960	Right-handed 310
Helix 43	AE7	C	7	12	Right-handed alpha
Helix 44	AE8	C	13	19	Right-handed alpha
Helix 45	AE9	C	24	44	Right-handed alpha
Helix 46	AF1	C	46	51	Right-handed 310
Helix 47	AF2	C	55	84	Right-handed alpha

There are 12 sheets in PDB entry 8HNT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	688	690	first strand
Strand 2	A	493	498	parallel
Strand 3	A	8	15	parallel
Strand 4	A	18	26	anti-parallel
Strand 5	A	32	42	anti-parallel
Strand 6	A	808	809	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	257	first strand
Strand 2	A	413	417	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	278	first strand
Strand 2	A	320	321	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	305	first strand
Strand 2	A	339	342	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	577	581	first strand
Strand 2	A	596	600	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	820	826	first strand
Strand 2	A	912	916	anti-parallel
Strand 3	A	904	907	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	834	835	first strand
Strand 2	A	899	900	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	838	840	first strand
Strand 2	A	894	896	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	884	885	first strand
Strand 2	A	891	892	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	930	937	first strand
Strand 2	A	919	927	anti-parallel
Strand 3	A	968	973	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	949	950	first strand
Strand 2	A	961	962	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1018	1022	first strand
Strand 2	A	1002	1005	anti-parallel
Strand 3	A	987	995	anti-parallel
Strand 4	A	978	982	anti-parallel
Strand 5	A	1029	1034	anti-parallel
Strand 6	A	1043	1044	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HNT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HNT