Analysis of interatomic Contacts of Structural Units in PDB entry:
8HNU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HNU entry

There are 2 chains in PDB entry 8HNU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	LEU 986
B	GLY 2	LEU 986

There are 66 helices in PDB entry 8HNU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	24	Right-handed alpha
Helix 2	AA2	A	56	64	Right-handed alpha
Helix 3	AA3	A	64	72	Right-handed alpha
Helix 4	AA4	A	102	113	Right-handed alpha
Helix 5	AA5	A	115	119	Right-handed 310
Helix 6	AA6	A	156	161	Right-handed alpha
Helix 7	AA7	A	291	298	Right-handed alpha
Helix 8	AA8	A	298	305	Right-handed alpha
Helix 9	AA9	A	327	331	Right-handed 310
Helix 10	AB1	A	356	362	Right-handed alpha
Helix 11	AB2	A	413	415	Right-handed 310
Helix 12	AB3	A	419	434	Right-handed alpha
Helix 13	AB4	A	436	455	Right-handed alpha
Helix 14	AB5	A	466	473	Right-handed alpha
Helix 15	AB6	A	473	486	Right-handed alpha
Helix 16	AB7	A	502	505	Right-handed 310
Helix 17	AB8	A	506	516	Right-handed alpha
Helix 18	AB9	A	519	532	Right-handed alpha
Helix 19	AC1	A	556	558	Right-handed 310
Helix 20	AC2	A	559	573	Right-handed alpha
Helix 21	AC3	A	574	579	Right-handed 310
Helix 22	AC4	A	594	607	Right-handed alpha
Helix 23	AC5	A	635	651	Right-handed alpha
Helix 24	AC6	A	666	686	Right-handed alpha
Helix 25	AC7	A	688	710	Right-handed alpha
Helix 26	AC8	A	750	760	Right-handed alpha
Helix 27	AC9	A	764	778	Right-handed alpha
Helix 28	AD1	A	792	796	Right-handed 310
Helix 29	AD2	A	817	832	Right-handed alpha
Helix 30	AD3	A	836	853	Right-handed alpha
Helix 31	AD4	A	854	861	Right-handed 310
Helix 32	AD5	A	862	867	Right-handed alpha
Helix 33	AD6	A	890	904	Right-handed alpha
Helix 34	AD7	B	14	24	Right-handed alpha
Helix 35	AD8	B	56	63	Right-handed alpha
Helix 36	AD9	B	64	72	Right-handed alpha
Helix 37	AE1	B	102	114	Right-handed alpha
Helix 38	AE2	B	115	119	Right-handed 310
Helix 39	AE3	B	156	161	Right-handed alpha
Helix 40	AE4	B	291	298	Right-handed alpha
Helix 41	AE5	B	298	305	Right-handed alpha
Helix 42	AE6	B	327	331	Right-handed 310
Helix 43	AE7	B	356	362	Right-handed alpha
Helix 44	AE8	B	413	415	Right-handed 310
Helix 45	AE9	B	419	434	Right-handed alpha
Helix 46	AF1	B	436	455	Right-handed alpha
Helix 47	AF2	B	464	473	Right-handed alpha
Helix 48	AF3	B	473	486	Right-handed alpha
Helix 49	AF4	B	502	505	Right-handed 310
Helix 50	AF5	B	506	516	Right-handed alpha
Helix 51	AF6	B	519	532	Right-handed alpha
Helix 52	AF7	B	556	558	Right-handed 310
Helix 53	AF8	B	559	573	Right-handed alpha
Helix 54	AF9	B	574	579	Right-handed 310
Helix 55	AG1	B	594	607	Right-handed alpha
Helix 56	AG2	B	635	651	Right-handed alpha
Helix 57	AG3	B	666	686	Right-handed alpha
Helix 58	AG4	B	688	710	Right-handed alpha
Helix 59	AG5	B	750	760	Right-handed alpha
Helix 60	AG6	B	764	778	Right-handed alpha
Helix 61	AG7	B	792	796	Right-handed 310
Helix 62	AG8	B	817	832	Right-handed alpha
Helix 63	AG9	B	836	853	Right-handed alpha
Helix 64	AH1	B	854	861	Right-handed 310
Helix 65	AH2	B	862	867	Right-handed alpha
Helix 66	AH3	B	890	904	Right-handed alpha

There are 25 sheets in PDB entry 8HNU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	B	306	312	anti-parallel
Strand 3	B	318	325	anti-parallel
Strand 4	B	333	343	anti-parallel
Strand 5	B	400	411	anti-parallel
Strand 6	B	261	271	anti-parallel
Strand 7	B	243	251	anti-parallel
Strand 8	B	232	239	anti-parallel
Strand 9	B	221	229	anti-parallel
Strand 10	B	129	132	anti-parallel
Strand 11	B	122	123	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	B	306	312	anti-parallel
Strand 3	B	318	325	anti-parallel
Strand 4	B	333	343	anti-parallel
Strand 5	B	346	348	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	37	first strand
Strand 2	A	45	48	anti-parallel
Strand 3	A	80	84	parallel
Strand 4	A	89	93	anti-parallel
Strand 5	A	98	100	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	123	first strand
Strand 2	A	129	132	anti-parallel
Strand 3	A	221	229	anti-parallel
Strand 4	A	232	239	anti-parallel
Strand 5	A	243	251	anti-parallel
Strand 6	A	261	271	anti-parallel
Strand 7	A	400	411	anti-parallel
Strand 8	A	333	343	anti-parallel
Strand 9	A	346	348	anti-parallel

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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	123	first strand
Strand 2	A	129	132	anti-parallel
Strand 3	A	221	229	anti-parallel
Strand 4	A	232	239	anti-parallel
Strand 5	A	243	251	anti-parallel
Strand 6	A	261	271	anti-parallel
Strand 7	A	400	411	anti-parallel
Strand 8	A	333	343	anti-parallel
Strand 9	A	318	325	anti-parallel
Strand 10	A	306	312	anti-parallel
Strand 11	B	4	7	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	148	first strand
Strand 2	A	163	166	anti-parallel
Strand 3	A	172	175	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	213	first strand
Strand 2	A	201	206	anti-parallel
Strand 3	A	277	286	anti-parallel
Strand 4	A	386	395	anti-parallel
Strand 5	A	352	354	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	460	first strand
Strand 2	A	925	932	anti-parallel
Strand 3	A	935	942	anti-parallel
Strand 4	A	977	984	parallel
Strand 5	A	955	959	anti-parallel
Strand 6	A	962	963	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	500	first strand
Strand 2	A	541	544	anti-parallel
Strand 3	A	548	551	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	581	583	first strand
Strand 2	A	591	593	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	664	665	first strand
Strand 2	A	719	720	anti-parallel
Strand 3	A	731	732	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	712	first strand
Strand 2	A	715	716	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	780	781	first strand
Strand 2	A	784	785	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	815	816	first strand
Strand 2	A	876	877	anti-parallel
Strand 3	A	884	885	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	906	909	first strand
Strand 2	A	912	915	anti-parallel
Strand 3	A	968	969	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	37	first strand
Strand 2	B	45	51	anti-parallel
Strand 3	B	80	85	parallel
Strand 4	B	88	93	anti-parallel
Strand 5	B	98	100	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	148	first strand
Strand 2	B	163	167	anti-parallel
Strand 3	B	172	175	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	213	first strand
Strand 2	B	202	206	anti-parallel
Strand 3	B	277	286	anti-parallel
Strand 4	B	386	395	anti-parallel
Strand 5	B	352	354	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	461	first strand
Strand 2	B	925	932	anti-parallel
Strand 3	B	935	942	anti-parallel
Strand 4	B	977	984	parallel
Strand 5	B	955	959	anti-parallel
Strand 6	B	962	964	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	499	500	first strand
Strand 2	B	541	544	anti-parallel
Strand 3	B	548	551	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	581	583	first strand
Strand 2	B	591	593	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	664	665	first strand
Strand 2	B	719	720	anti-parallel
Strand 3	B	731	732	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	780	781	first strand
Strand 2	B	784	785	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	815	816	first strand
Strand 2	B	876	877	anti-parallel
Strand 3	B	884	885	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	906	909	first strand
Strand 2	B	912	915	anti-parallel
Strand 3	B	968	969	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HNU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HNU