Analysis of interatomic Contacts of Structural Units in PDB entry:
8HNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HNV entry

There are 5 chains in PDB entry 8HNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ARG 1054
B
 A 18 U 125
C
 T 1 T 18
D
 T 23 A 35
E
 MET 1GLN 87
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8HNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 86Right-handed alpha
Helix 2
AA2
A
99 109Right-handed alpha
Helix 3
AA3
A
113 127Right-handed alpha
Helix 4
AA4
A
148 159Right-handed alpha
Helix 5
AA5
A
166 173Right-handed alpha
Helix 6
AA6
A
174 179Right-handed alpha
Helix 7
AA7
A
188 192Right-handed 310
Helix 8
AA8
A
194 212Right-handed alpha
Helix 9
AA9
A
218 231Right-handed alpha
Helix 10
AB1
A
260 271Right-handed alpha
Helix 11
AB2
A
291 295Right-handed 310
Helix 12
AB3
A
296 301Right-handed alpha
Helix 13
AB4
A
305 309Right-handed 310
Helix 14
AB5
A
343 356Right-handed alpha
Helix 15
AB6
A
358 368Right-handed alpha
Helix 16
AB7
A
368 382Right-handed alpha
Helix 17
AB8
A
384 392Right-handed alpha
Helix 18
AB9
A
397 405Right-handed alpha
Helix 19
AC1
A
417 430Right-handed alpha
Helix 20
AC2
A
436 442Right-handed alpha
Helix 21
AC3
A
467 489Right-handed alpha
Helix 22
AC4
A
666 678Right-handed alpha
Helix 23
AC5
A
692 703Right-handed alpha
Helix 24
AC6
A
712 714Right-handed 310
Helix 25
AC7
A
715 722Right-handed alpha
Helix 26
AC8
A
723 725Right-handed 310
Helix 27
AC9
A
771 779Right-handed alpha
Helix 28
AD1
A
782 787Right-handed alpha
Helix 29
AD2
A
829 832Right-handed 310
Helix 30
AD3
A
842 844Right-handed 310
Helix 31
AD4
A
845 851Right-handed alpha
Helix 32
AD5
A
858 872Right-handed alpha
Helix 33
AD6
A
875 880Right-handed alpha
Helix 34
AD7
A
938 944Right-handed alpha
Helix 35
AD8
A
956 960Right-handed 310
Helix 36
AD9
E
7 12Right-handed alpha
Helix 37
AE1
E
13 20Right-handed alpha
Helix 38
AE2
E
21 23Right-handed 310
Helix 39
AE3
E
24 44Right-handed alpha
Helix 40
AE4
E
46 50Right-handed 310
Helix 41
AE5
E
55 84Right-handed alpha
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There are 8 sheets in PDB entry 8HNV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
12 13anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
35 42anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 496first strand
Strand 2
A
688 690parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
825 826first strand
Strand 2
A
912 914anti-parallel
Strand 3
A
905 907anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
834 840first strand
Strand 2
A
894 900anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
884 885first strand
Strand 2
A
891 892anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
930 937first strand
Strand 2
A
919 927anti-parallel
Strand 3
A
968 973anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1018 1022first strand
Strand 2
A
1002 1006anti-parallel
Strand 3
A
988 991anti-parallel
Strand 4
A
978 982anti-parallel
Strand 5
A
1029 1034anti-parallel
Strand 6
A
1043 1044anti-parallel
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