Analysis of interatomic Contacts of Structural Units in PDB entry:
8HNW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HNW entry

There are 4 chains in PDB entry 8HNW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 9ARG 1054
B
 G 1 U 126
C
 T 1 C 35
D
 A 1 A 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8HNW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 86Right-handed alpha
Helix 2
AA2
A
99 107Right-handed alpha
Helix 3
AA3
A
113 127Right-handed alpha
Helix 4
AA4
A
147 157Right-handed alpha
Helix 5
AA5
A
158 162Right-handed 310
Helix 6
AA6
A
166 179Right-handed alpha
Helix 7
AA7
A
194 213Right-handed alpha
Helix 8
AA8
A
218 231Right-handed alpha
Helix 9
AA9
A
239 246Right-handed alpha
Helix 10
AB1
A
260 274Right-handed alpha
Helix 11
AB2
A
287 295Right-handed alpha
Helix 12
AB3
A
305 313Right-handed alpha
Helix 13
AB4
A
343 354Right-handed alpha
Helix 14
AB5
A
358 366Right-handed alpha
Helix 15
AB6
A
368 382Right-handed alpha
Helix 16
AB7
A
384 392Right-handed alpha
Helix 17
AB8
A
397 408Right-handed alpha
Helix 18
AB9
A
417 428Right-handed alpha
Helix 19
AC1
A
433 441Right-handed alpha
Helix 20
AC2
A
467 489Right-handed alpha
Helix 21
AC3
A
659 677Right-handed alpha
Helix 22
AC4
A
692 697Right-handed alpha
Helix 23
AC5
A
714 725Right-handed alpha
Helix 24
AC6
A
727 737Right-handed alpha
Helix 25
AC7
A
770 778Right-handed alpha
Helix 26
AC8
A
785 790Right-handed alpha
Helix 27
AC9
A
829 832Right-handed 310
Helix 28
AD1
A
842 844Right-handed 310
Helix 29
AD2
A
845 850Right-handed alpha
Helix 30
AD3
A
858 871Right-handed alpha
Helix 31
AD4
A
875 880Right-handed alpha
Helix 32
AD5
A
938 944Right-handed alpha
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There are 8 sheets in PDB entry 8HNW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
38 42anti-parallel
Strand 3
A
808 809parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 279first strand
Strand 2
A
282 284anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 496first strand
Strand 2
A
689 690parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
825 826first strand
Strand 2
A
912 914anti-parallel
Strand 3
A
905 907anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
834 840first strand
Strand 2
A
894 900anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
884 885first strand
Strand 2
A
891 892anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
931 937first strand
Strand 2
A
919 926anti-parallel
Strand 3
A
968 973anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1018 1022first strand
Strand 2
A
1002 1005anti-parallel
Strand 3
A
987 995anti-parallel
Strand 4
A
977 982anti-parallel
Strand 5
A
1029 1034anti-parallel
Strand 6
A
1043 1044anti-parallel
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