Analysis of interatomic Contacts of Structural Units in PDB entry:
8HNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HNY entry

There is 1 chain in PDB entry 8HNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3TRP 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8HNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 24Right-handed alpha
Helix 2
AA2
A
46 56Right-handed alpha
Helix 3
AA3
A
61 66Right-handed 310
Helix 4
AA4
A
85 93Right-handed alpha
Helix 5
AA5
A
95 104Right-handed alpha
Helix 6
AA6
A
104 128Right-handed alpha
Helix 7
AA7
A
135 139Right-handed alpha
Helix 8
AA8
A
139 152Right-handed alpha
Helix 9
AA9
A
157 172Right-handed alpha
Helix 10
AB1
A
178 203Right-handed alpha
Helix 11
AB2
A
207 214Right-handed alpha
Helix 12
AB3
A
223 255Right-handed alpha
Helix 13
AB4
A
256 266Right-handed alpha
Helix 14
AB5
A
269 281Right-handed alpha
Helix 15
AB6
A
312 318Right-handed alpha
Helix 16
AB7
A
343 347Right-handed 310
Helix 17
AB8
A
348 349Right-handed 310
Helix 18
AB9
A
350 367Right-handed alpha
Helix 19
AC1
A
376 380Right-handed 310
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There are 3 sheets in PDB entry 8HNY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
30 34parallel
Strand 3
A
40 44anti-parallel
Strand 4
A
308 311parallel
Strand 5
A
288 292anti-parallel
Strand 6
A
59 60anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
372 373anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 298first strand
Strand 2
A
301 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il