Analysis of interatomic Contacts of Structural Units in PDB entry:
8HO6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HO6 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 8HO6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2GLU 178
A
 HIS 180VAL 181
A
 ARG 184ALA 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8HO6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 15Right-handed alpha
Helix 2
AA2
A
19 21Right-handed 310
Helix 3
AA3
A
62 74Right-handed alpha
Helix 4
AA4
A
105 111Right-handed alpha
Helix 5
AA5
A
119 139Right-handed alpha
Helix 6
AA6
A
150 152Right-handed 310
Helix 7
AA7
A
193 200Right-handed alpha
Helix 8
AA8
A
203 221Right-handed alpha
Helix 9
AA9
A
235 241Right-handed alpha
Helix 10
AB1
A
242 244Right-handed 310
Helix 11
AB2
A
246 253Right-handed 310
Helix 12
AB3
A
263 278Right-handed alpha
Helix 13
AB4
A
281 285Right-handed 310
Helix 14
AB5
A
287 296Right-handed alpha
Helix 15
AB6
A
297 300Right-handed 310
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There are 4 sheets in PDB entry 8HO6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
84 90parallel
Strand 3
A
93 99anti-parallel
Strand 4
A
48 54anti-parallel
Strand 5
A
31 37anti-parallel
Strand 6
A
23 26anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
171 172anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
162 164anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
A
201 202anti-parallel
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