Analysis of interatomic Contacts of Structural Units in PDB entry:
8HO9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HO9 entry

There are 2 chains in PDB entry 8HO9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	GLY 812
B	GLY 2	GLY 812

There are 46 helices in PDB entry 8HO9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	157	164	Right-handed alpha
Helix 2	AA2	A	164	169	Right-handed alpha
Helix 3	AA3	A	210	214	Right-handed alpha
Helix 4	AA4	A	223	229	Right-handed alpha
Helix 5	AA5	A	282	292	Right-handed alpha
Helix 6	AA6	A	294	314	Right-handed alpha
Helix 7	AA7	A	322	331	Right-handed alpha
Helix 8	AA8	A	331	344	Right-handed alpha
Helix 9	AA9	A	360	371	Right-handed alpha
Helix 10	AB1	A	374	388	Right-handed alpha
Helix 11	AB2	A	416	433	Right-handed alpha
Helix 12	AB3	A	434	439	Right-handed 310
Helix 13	AB4	A	454	467	Right-handed alpha
Helix 14	AB5	A	513	533	Right-handed alpha
Helix 15	AB6	A	535	557	Right-handed alpha
Helix 16	AB7	A	586	595	Right-handed alpha
Helix 17	AB8	A	602	615	Right-handed alpha
Helix 18	AB9	A	635	641	Right-handed 310
Helix 19	AC1	A	653	666	Right-handed alpha
Helix 20	AC2	A	668	680	Right-handed alpha
Helix 21	AC3	A	681	686	Right-handed 310
Helix 22	AC4	A	687	692	Right-handed alpha
Helix 23	AC5	A	720	731	Right-handed alpha
Helix 24	AC6	B	157	164	Right-handed alpha
Helix 25	AC7	B	164	169	Right-handed alpha
Helix 26	AC8	B	210	214	Right-handed alpha
Helix 27	AC9	B	223	229	Right-handed alpha
Helix 28	AD1	B	282	292	Right-handed alpha
Helix 29	AD2	B	294	314	Right-handed alpha
Helix 30	AD3	B	322	331	Right-handed alpha
Helix 31	AD4	B	331	344	Right-handed alpha
Helix 32	AD5	B	360	371	Right-handed alpha
Helix 33	AD6	B	374	388	Right-handed alpha
Helix 34	AD7	B	416	433	Right-handed alpha
Helix 35	AD8	B	434	439	Right-handed 310
Helix 36	AD9	B	454	467	Right-handed alpha
Helix 37	AE1	B	513	533	Right-handed alpha
Helix 38	AE2	B	535	557	Right-handed alpha
Helix 39	AE3	B	586	595	Right-handed alpha
Helix 40	AE4	B	602	615	Right-handed alpha
Helix 41	AE5	B	635	641	Right-handed 310
Helix 42	AE6	B	653	666	Right-handed alpha
Helix 43	AE7	B	668	680	Right-handed alpha
Helix 44	AE8	B	681	686	Right-handed 310
Helix 45	AE9	B	687	692	Right-handed alpha
Helix 46	AF1	B	720	732	Right-handed alpha

There are 26 sheets in PDB entry 8HO9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	A	13	16	anti-parallel
Strand 3	A	95	100	anti-parallel
Strand 4	A	104	111	anti-parallel
Strand 5	A	114	121	anti-parallel
Strand 6	A	128	137	anti-parallel
Strand 7	A	256	267	anti-parallel
Strand 8	A	193	199	anti-parallel
Strand 9	A	180	183	anti-parallel
Strand 10	A	174	177	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	29	first strand
Strand 2	A	34	39	anti-parallel
Strand 3	A	44	48	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	57	first strand
Strand 2	A	143	156	anti-parallel
Strand 3	A	72	77	anti-parallel
Strand 4	A	80	82	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	57	first strand
Strand 2	A	143	156	anti-parallel
Strand 3	A	241	251	anti-parallel
Strand 4	A	205	209	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	276	first strand
Strand 2	A	279	280	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	319	first strand
Strand 2	A	755	762	anti-parallel
Strand 3	A	765	772	anti-parallel
Strand 4	A	804	811	parallel
Strand 5	A	781	786	anti-parallel
Strand 6	A	789	790	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	359	first strand
Strand 2	A	398	400	anti-parallel
Strand 3	A	405	406	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	444	first strand
Strand 2	A	447	453	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	512	first strand
Strand 2	A	566	567	anti-parallel
Strand 3	A	573	574	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	585	first strand
Strand 2	A	624	625	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	616	617	first strand
Strand 2	A	620	621	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	651	652	first strand
Strand 2	A	699	702	anti-parallel
Strand 3	A	713	716	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	738	first strand
Strand 2	A	743	745	anti-parallel
Strand 3	A	795	796	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	8	first strand
Strand 2	B	13	16	anti-parallel
Strand 3	B	95	100	anti-parallel
Strand 4	B	104	111	anti-parallel
Strand 5	B	114	121	anti-parallel
Strand 6	B	128	137	anti-parallel
Strand 7	B	256	267	anti-parallel
Strand 8	B	193	199	anti-parallel
Strand 9	B	180	183	anti-parallel
Strand 10	B	174	177	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	29	first strand
Strand 2	B	34	39	anti-parallel
Strand 3	B	44	48	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	143	156	anti-parallel
Strand 3	B	72	77	anti-parallel
Strand 4	B	80	82	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	143	156	anti-parallel
Strand 3	B	241	251	anti-parallel
Strand 4	B	205	209	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	276	first strand
Strand 2	B	279	280	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	319	first strand
Strand 2	B	755	762	anti-parallel
Strand 3	B	765	772	anti-parallel
Strand 4	B	804	811	parallel
Strand 5	B	781	786	anti-parallel
Strand 6	B	789	790	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	359	first strand
Strand 2	B	398	400	anti-parallel
Strand 3	B	405	406	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	444	first strand
Strand 2	B	447	453	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	512	first strand
Strand 2	B	566	567	anti-parallel
Strand 3	B	573	574	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	584	585	first strand
Strand 2	B	624	625	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	616	617	first strand
Strand 2	B	620	621	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	652	first strand
Strand 2	B	699	702	anti-parallel
Strand 3	B	713	716	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	736	739	first strand
Strand 2	B	742	745	anti-parallel
Strand 3	B	795	796	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HO9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HO9