Analysis of interatomic Contacts of Structural Units in PDB entry:
8HOA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HOA entry

There is 1 chain in PDB entry 8HOA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4LEU 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8HOA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 18Right-handed alpha
Helix 2
AA2
A
71 76Right-handed alpha
Helix 3
AA3
A
108 113Right-handed alpha
Helix 4
AA4
A
121 141Right-handed alpha
Helix 5
AA5
A
152 154Right-handed 310
Helix 6
AA6
A
195 202Right-handed alpha
Helix 7
AA7
A
205 223Right-handed alpha
Helix 8
AA8
A
237 243Right-handed alpha
Helix 9
AA9
A
244 248Right-handed 310
Helix 10
AB1
A
251 255Right-handed 310
Helix 11
AB2
A
257 261Right-handed 310
Helix 12
AB3
A
265 280Right-handed alpha
Helix 13
AB4
A
283 287Right-handed 310
Helix 14
AB5
A
289 298Right-handed alpha
Helix 15
AB6
A
299 301Right-handed 310
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There are 2 sheets in PDB entry 8HOA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
86 92parallel
Strand 3
A
95 101anti-parallel
Strand 4
A
50 56anti-parallel
Strand 5
A
32 39anti-parallel
Strand 6
A
25 29anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
156 158anti-parallel
Strand 3
A
164 166anti-parallel
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