Analysis of interatomic Contacts of Structural Units in PDB entry:
8HOJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HOJ entry

There are 2 chains in PDB entry 8HOJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLY 463
B
 THR 2GLY 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8HOJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 29Right-handed alpha
Helix 2
AA2
A
46 58Right-handed alpha
Helix 3
AA3
A
78 94Right-handed alpha
Helix 4
AA4
A
110 112Right-handed 310
Helix 5
AA5
A
113 120Right-handed alpha
Helix 6
AA6
A
131 147Right-handed alpha
Helix 7
AA7
A
151 156Right-handed 310
Helix 8
AA8
A
174 176Right-handed 310
Helix 9
AA9
A
177 181Right-handed 310
Helix 10
AB1
A
183 195Right-handed alpha
Helix 11
AB2
A
196 200Right-handed 310
Helix 12
AB3
A
212 222Right-handed alpha
Helix 13
AB4
A
246 256Right-handed alpha
Helix 14
AB5
A
273 288Right-handed alpha
Helix 15
AB6
A
316 321Right-handed alpha
Helix 16
AB7
A
332 339Right-handed alpha
Helix 17
AB8
A
350 360Right-handed alpha
Helix 18
AB9
A
372 382Right-handed alpha
Helix 19
AC1
A
408 420Right-handed alpha
Helix 20
AC2
A
424 442Right-handed alpha
Helix 21
AC3
A
445 461Right-handed alpha
Helix 22
AC4
B
14 31Right-handed alpha
Helix 23
AC5
B
46 59Right-handed alpha
Helix 24
AC6
B
79 95Right-handed alpha
Helix 25
AC7
B
110 112Right-handed 310
Helix 26
AC8
B
113 120Right-handed alpha
Helix 27
AC9
B
131 147Right-handed alpha
Helix 28
AD1
B
151 156Right-handed 310
Helix 29
AD2
B
183 195Right-handed alpha
Helix 30
AD3
B
196 200Right-handed 310
Helix 31
AD4
B
212 222Right-handed alpha
Helix 32
AD5
B
248 254Right-handed alpha
Helix 33
AD6
B
273 288Right-handed alpha
Helix 34
AD7
B
308 312Right-handed 310
Helix 35
AD8
B
316 321Right-handed alpha
Helix 36
AD9
B
332 339Right-handed alpha
Helix 37
AE1
B
350 360Right-handed alpha
Helix 38
AE2
B
372 382Right-handed alpha
Helix 39
AE3
B
408 421Right-handed alpha
Helix 40
AE4
B
424 442Right-handed alpha
Helix 41
AE5
B
445 461Right-handed alpha
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There are 6 sheets in PDB entry 8HOJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 70first strand
Strand 2
A
34 40parallel
Strand 3
A
4 9parallel
Strand 4
A
100 106parallel
Strand 5
A
124 128parallel
Strand 6
A
202 205parallel
Strand 7
A
227 230parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
171 172anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 328first strand
Strand 2
A
290 294parallel
Strand 3
A
261 265parallel
Strand 4
A
342 347parallel
Strand 5
A
364 366parallel
Strand 6
A
387 389parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 70first strand
Strand 2
B
34 40parallel
Strand 3
B
3 9parallel
Strand 4
B
99 107parallel
Strand 5
B
124 128parallel
Strand 6
B
203 205parallel
Strand 7
B
228 230parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 162first strand
Strand 2
B
171 172anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 328first strand
Strand 2
B
291 294parallel
Strand 3
B
261 265parallel
Strand 4
B
342 347parallel
Strand 5
B
364 366parallel
Strand 6
B
387 389parallel
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