Analysis of interatomic Contacts of Structural Units in PDB entry:
8HOY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HOY entry

There are 3 chains in PDB entry 8HOY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 1006
C	MET 1	GLU 426
B	MET 1	TYR 218

There are 54 helices in PDB entry 8HOY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	49	Right-handed alpha
Helix 2	AA2	A	108	117	Right-handed alpha
Helix 3	AA3	A	206	208	Right-handed 310
Helix 4	AA4	A	209	220	Right-handed alpha
Helix 5	AA5	A	226	230	Right-handed 310
Helix 6	AA6	A	240	253	Right-handed alpha
Helix 7	AA7	A	267	281	Right-handed alpha
Helix 8	AA8	A	331	339	Right-handed alpha
Helix 9	AA9	A	345	354	Right-handed alpha
Helix 10	AB1	A	373	377	Right-handed 310
Helix 11	AB2	A	380	390	Right-handed alpha
Helix 12	AB3	A	439	446	Right-handed alpha
Helix 13	AB4	A	448	474	Right-handed alpha
Helix 14	AB5	A	474	487	Right-handed alpha
Helix 15	AB6	A	489	493	Right-handed 310
Helix 16	AB7	A	497	502	Right-handed alpha
Helix 17	AB8	A	502	514	Right-handed alpha
Helix 18	AB9	A	552	562	Right-handed alpha
Helix 19	AC1	A	576	591	Right-handed alpha
Helix 20	AC2	A	621	643	Right-handed alpha
Helix 21	AC3	A	646	665	Right-handed alpha
Helix 22	AC4	A	666	672	Right-handed alpha
Helix 23	AC5	A	680	702	Right-handed alpha
Helix 24	AC6	A	764	781	Right-handed alpha
Helix 25	AC7	A	836	854	Right-handed alpha
Helix 26	AC8	A	860	882	Right-handed alpha
Helix 27	AC9	A	908	915	Right-handed alpha
Helix 28	AD1	A	938	942	Right-handed 310
Helix 29	AD2	A	970	983	Right-handed alpha
Helix 30	AD3	A	986	997	Right-handed alpha
Helix 31	AD4	C	4	18	Right-handed alpha
Helix 32	AD5	C	24	36	Right-handed alpha
Helix 33	AD6	C	56	61	Right-handed 310
Helix 34	AD7	C	107	121	Right-handed alpha
Helix 35	AD8	C	147	159	Right-handed alpha
Helix 36	AD9	C	177	188	Right-handed alpha
Helix 37	AE1	C	249	257	Right-handed alpha
Helix 38	AE2	C	285	298	Right-handed alpha
Helix 39	AE3	C	316	324	Right-handed alpha
Helix 40	AE4	C	330	341	Right-handed alpha
Helix 41	AE5	C	341	350	Right-handed alpha
Helix 42	AE6	C	352	362	Right-handed alpha
Helix 43	AE7	C	367	374	Right-handed alpha
Helix 44	AE8	C	392	396	Right-handed 310
Helix 45	AE9	C	397	406	Right-handed alpha
Helix 46	AF1	C	406	425	Right-handed alpha
Helix 47	AF2	B	16	18	Right-handed 310
Helix 48	AF3	B	19	31	Right-handed alpha
Helix 49	AF4	B	33	39	Right-handed alpha
Helix 50	AF5	B	45	49	Right-handed 310
Helix 51	AF6	B	86	101	Right-handed alpha
Helix 52	AF7	B	137	150	Right-handed alpha
Helix 53	AF8	B	165	170	Right-handed alpha
Helix 54	AF9	B	194	205	Right-handed alpha

There are 16 sheets in PDB entry 8HOY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	126	first strand
Strand 2	A	2	10	anti-parallel
Strand 3	A	17	23	anti-parallel
Strand 4	A	29	35	anti-parallel
Strand 5	A	139	141	parallel
Strand 6	A	133	136	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	43	first strand
Strand 2	A	87	93	anti-parallel
Strand 3	A	56	62	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	65	67	anti-parallel
Strand 3	A	516	518	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	A	568	574	parallel
Strand 3	A	610	615	anti-parallel
Strand 4	A	597	601	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	223	first strand
Strand 2	A	236	239	parallel
Strand 3	A	197	204	parallel
Strand 4	A	183	191	anti-parallel
Strand 5	A	162	169	anti-parallel
Strand 6	A	258	261	parallel
Strand 7	A	327	330	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	287	first strand
Strand 2	A	294	296	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	303	first strand
Strand 2	A	316	321	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	360	first strand
Strand 2	A	368	371	anti-parallel
Strand 3	A	414	419	anti-parallel
Strand 4	A	401	411	anti-parallel
Strand 5	A	394	397	anti-parallel
Strand 6	A	428	433	anti-parallel
Strand 7	A	355	360	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	732	734	first strand
Strand 2	A	711	713	anti-parallel
Strand 3	A	703	708	anti-parallel
Strand 4	A	743	749	anti-parallel
Strand 5	A	754	759	anti-parallel
Strand 6	A	544	550	anti-parallel
Strand 7	A	789	802	anti-parallel
Strand 8	A	805	810	anti-parallel
Strand 9	A	823	826	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	76	82	anti-parallel
Strand 3	C	194	201	anti-parallel
Strand 4	C	208	210	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	132	first strand
Strand 2	C	135	143	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	223	first strand
Strand 2	C	237	239	anti-parallel
Strand 3	C	243	245	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	C	273	274	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	380	first strand
Strand 2	C	383	389	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	62	66	parallel
Strand 3	B	154	157	parallel
Strand 4	B	176	177	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	216	217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HOY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HOY