Analysis of interatomic Contacts of Structural Units in PDB entry:
8HP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HP2 entry

There are 2 chains in PDB entry 8HP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2MET 546
B
 SER 2MET 546
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 8HP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 17Right-handed alpha
Helix 2
AA2
A
30 35Right-handed alpha
Helix 3
AA3
A
36 40Right-handed 310
Helix 4
AA4
A
50 65Right-handed alpha
Helix 5
AA5
A
87 92Right-handed alpha
Helix 6
AA6
A
146 162Right-handed alpha
Helix 7
AA7
A
172 174Right-handed 310
Helix 8
AA8
A
181 184Right-handed 310
Helix 9
AA9
A
195 213Right-handed alpha
Helix 10
AB1
A
222 227Right-handed alpha
Helix 11
AB2
A
229 241Right-handed alpha
Helix 12
AB3
A
266 270Right-handed 310
Helix 13
AB4
A
271 280Right-handed alpha
Helix 14
AB5
A
327 337Right-handed alpha
Helix 15
AB6
A
338 343Right-handed alpha
Helix 16
AB7
A
368 380Right-handed alpha
Helix 17
AB8
A
391 397Right-handed alpha
Helix 18
AB9
A
398 400Right-handed 310
Helix 19
AC1
A
418 435Right-handed alpha
Helix 20
AC2
A
446 452Right-handed alpha
Helix 21
AC3
A
454 462Right-handed alpha
Helix 22
AC4
A
497 499Right-handed 310
Helix 23
AC5
A
500 506Right-handed alpha
Helix 24
AC6
A
517 527Right-handed alpha
Helix 25
AC7
B
6 17Right-handed alpha
Helix 26
AC8
B
30 35Right-handed alpha
Helix 27
AC9
B
36 40Right-handed 310
Helix 28
AD1
B
50 65Right-handed alpha
Helix 29
AD2
B
88 92Right-handed alpha
Helix 30
AD3
B
146 162Right-handed alpha
Helix 31
AD4
B
172 174Right-handed 310
Helix 32
AD5
B
181 184Right-handed 310
Helix 33
AD6
B
195 213Right-handed alpha
Helix 34
AD7
B
222 227Right-handed alpha
Helix 35
AD8
B
229 241Right-handed alpha
Helix 36
AD9
B
266 270Right-handed 310
Helix 37
AE1
B
271 280Right-handed alpha
Helix 38
AE2
B
327 337Right-handed alpha
Helix 39
AE3
B
338 343Right-handed alpha
Helix 40
AE4
B
368 380Right-handed alpha
Helix 41
AE5
B
391 397Right-handed alpha
Helix 42
AE6
B
398 400Right-handed 310
Helix 43
AE7
B
418 435Right-handed alpha
Helix 44
AE8
B
446 452Right-handed alpha
Helix 45
AE9
B
454 462Right-handed alpha
Helix 46
AF1
B
497 499Right-handed 310
Helix 47
AF2
B
500 506Right-handed alpha
Helix 48
AF3
B
517 527Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8HP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
177 179anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
69 75parallel
Strand 3
A
96 103parallel
Strand 4
A
165 170parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 264first strand
Strand 2
A
244 246parallel
Strand 3
A
216 220parallel
Strand 4
A
283 287parallel
Strand 5
A
307 311parallel
Strand 6
A
315 318anti-parallel
Strand 7
A
321 324anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 409first strand
Strand 2
A
385 388parallel
Strand 3
A
440 445parallel
Strand 4
A
467 473parallel
Strand 5
A
536 542parallel
Strand 6
A
510 515parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
177 179anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
21 23parallel
Strand 3
B
69 75parallel
Strand 4
B
96 103parallel
Strand 5
B
165 170parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 264first strand
Strand 2
B
244 246parallel
Strand 3
B
216 220parallel
Strand 4
B
283 287parallel
Strand 5
B
307 311parallel
Strand 6
B
315 318anti-parallel
Strand 7
B
321 324anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
407 409first strand
Strand 2
B
385 388parallel
Strand 3
B
440 445parallel
Strand 4
B
467 473parallel
Strand 5
B
536 542parallel
Strand 6
B
510 515parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il