Analysis of interatomic Contacts of Structural Units in PDB entry:
8HP4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HP4 entry

There are 2 chains in PDB entry 8HP4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASN 563
B
 SER 2ALA 560
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 8HP4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 17Right-handed alpha
Helix 2
AA2
A
30 35Right-handed alpha
Helix 3
AA3
A
36 40Right-handed 310
Helix 4
AA4
A
50 63Right-handed alpha
Helix 5
AA5
A
77 83Right-handed alpha
Helix 6
AA6
A
83 93Right-handed alpha
Helix 7
AA7
A
125 132Right-handed alpha
Helix 8
AA8
A
133 135Right-handed 310
Helix 9
AA9
A
143 145Right-handed 310
Helix 10
AB1
A
146 162Right-handed alpha
Helix 11
AB2
A
172 174Right-handed 310
Helix 12
AB3
A
181 185Right-handed 310
Helix 13
AB4
A
195 213Right-handed alpha
Helix 14
AB5
A
222 227Right-handed alpha
Helix 15
AB6
A
229 241Right-handed alpha
Helix 16
AB7
A
266 270Right-handed 310
Helix 17
AB8
A
271 280Right-handed alpha
Helix 18
AB9
A
327 337Right-handed alpha
Helix 19
AC1
A
338 343Right-handed 310
Helix 20
AC2
A
368 376Right-handed alpha
Helix 21
AC3
A
377 379Right-handed 310
Helix 22
AC4
A
391 398Right-handed alpha
Helix 23
AC5
A
418 435Right-handed alpha
Helix 24
AC6
A
446 453Right-handed alpha
Helix 25
AC7
A
454 462Right-handed alpha
Helix 26
AC8
A
477 484Right-handed alpha
Helix 27
AC9
A
488 492Right-handed 310
Helix 28
AD1
A
497 499Right-handed 310
Helix 29
AD2
A
500 505Right-handed alpha
Helix 30
AD3
A
517 527Right-handed alpha
Helix 31
AD4
A
549 560Right-handed alpha
Helix 32
AD5
B
6 17Right-handed alpha
Helix 33
AD6
B
30 35Right-handed alpha
Helix 34
AD7
B
36 40Right-handed 310
Helix 35
AD8
B
50 63Right-handed alpha
Helix 36
AD9
B
77 83Right-handed alpha
Helix 37
AE1
B
83 93Right-handed alpha
Helix 38
AE2
B
125 132Right-handed alpha
Helix 39
AE3
B
133 135Right-handed 310
Helix 40
AE4
B
143 145Right-handed 310
Helix 41
AE5
B
146 162Right-handed alpha
Helix 42
AE6
B
172 174Right-handed 310
Helix 43
AE7
B
181 185Right-handed 310
Helix 44
AE8
B
195 212Right-handed alpha
Helix 45
AE9
B
222 227Right-handed alpha
Helix 46
AF1
B
229 241Right-handed alpha
Helix 47
AF2
B
266 270Right-handed 310
Helix 48
AF3
B
271 280Right-handed alpha
Helix 49
AF4
B
327 337Right-handed alpha
Helix 50
AF5
B
338 343Right-handed 310
Helix 51
AF6
B
368 376Right-handed alpha
Helix 52
AF7
B
377 379Right-handed 310
Helix 53
AF8
B
391 398Right-handed alpha
Helix 54
AF9
B
418 435Right-handed alpha
Helix 55
AG1
B
446 452Right-handed alpha
Helix 56
AG2
B
455 462Right-handed alpha
Helix 57
AG3
B
477 484Right-handed alpha
Helix 58
AG4
B
488 492Right-handed 310
Helix 59
AG5
B
497 499Right-handed 310
Helix 60
AG6
B
500 505Right-handed alpha
Helix 61
AG7
B
517 527Right-handed alpha
Helix 62
AG8
B
549 560Right-handed alpha
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There are 8 sheets in PDB entry 8HP4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
177 179anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
21 24parallel
Strand 3
A
69 75parallel
Strand 4
A
96 103parallel
Strand 5
A
165 170parallel
Strand 6
A
138 140parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 264first strand
Strand 2
A
244 246parallel
Strand 3
A
216 220parallel
Strand 4
A
283 287parallel
Strand 5
A
308 311parallel
Strand 6
A
315 318anti-parallel
Strand 7
A
321 324anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 409first strand
Strand 2
A
385 388parallel
Strand 3
A
440 445parallel
Strand 4
A
467 473parallel
Strand 5
A
536 542parallel
Strand 6
A
510 515parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
177 179anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
21 24parallel
Strand 3
B
69 75parallel
Strand 4
B
96 103parallel
Strand 5
B
165 170parallel
Strand 6
B
138 140parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 264first strand
Strand 2
B
244 246parallel
Strand 3
B
216 220parallel
Strand 4
B
283 287parallel
Strand 5
B
308 311parallel
Strand 6
B
315 318anti-parallel
Strand 7
B
321 324anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
407 409first strand
Strand 2
B
385 388parallel
Strand 3
B
440 445parallel
Strand 4
B
467 473parallel
Strand 5
B
536 542parallel
Strand 6
B
510 515parallel
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