Analysis of interatomic Contacts of Structural Units in PDB entry:
8HP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HP8 entry

There are 3 chains in PDB entry 8HP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2LYS 162
B
 SER 3LYS 162
C
 SER 3LYS 162
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8HP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 19Right-handed alpha
Helix 2
AA2
A
52 64Right-handed alpha
Helix 3
AA3
A
64 75Right-handed alpha
Helix 4
AA4
A
80 95Right-handed alpha
Helix 5
AA5
A
96 100Right-handed 310
Helix 6
AA6
A
103 112Right-handed alpha
Helix 7
AA7
A
113 122Right-handed alpha
Helix 8
AA8
A
132 147Right-handed alpha
Helix 9
AA9
A
150 160Right-handed alpha
Helix 10
AB1
B
7 19Right-handed alpha
Helix 11
AB2
B
52 64Right-handed alpha
Helix 12
AB3
B
64 75Right-handed alpha
Helix 13
AB4
B
80 95Right-handed alpha
Helix 14
AB5
B
96 100Right-handed 310
Helix 15
AB6
B
103 112Right-handed alpha
Helix 16
AB7
B
113 124Right-handed alpha
Helix 17
AB8
B
132 147Right-handed alpha
Helix 18
AB9
B
150 160Right-handed alpha
Helix 19
AC1
C
7 19Right-handed alpha
Helix 20
AC2
C
52 64Right-handed alpha
Helix 21
AC3
C
64 75Right-handed alpha
Helix 22
AC4
C
80 95Right-handed alpha
Helix 23
AC5
C
96 100Right-handed 310
Helix 24
AC6
C
103 112Right-handed alpha
Helix 25
AC7
C
113 122Right-handed alpha
Helix 26
AC8
C
132 148Right-handed alpha
Helix 27
AC9
C
150 160Right-handed alpha
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There are 5 sheets in PDB entry 8HP8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
35 37anti-parallel
Strand 3
A
40 41anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
130 131anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 25first strand
Strand 2
B
35 37anti-parallel
Strand 3
B
40 41anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
130 131anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 25first strand
Strand 2
C
35 37anti-parallel
Strand 3
C
40 41anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il