Analysis of interatomic Contacts of Structural Units in PDB entry:
8HPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HPD entry

There are 3 chains in PDB entry 8HPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1VAL 212
B
 GLU 2PHE 219
C
 VAL 1PHE 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 8HPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
42 76Right-handed alpha
Helix 3
AA3
A
85 95Right-handed 310
Helix 4
AA4
A
100 104Right-handed 310
Helix 5
AA5
A
112 134Right-handed alpha
Helix 6
AA6
A
147 151Right-handed 310
Helix 7
AA7
A
158 190Right-handed alpha
Helix 8
AA8
A
193 204Right-handed alpha
Helix 9
AA9
B
12 16Right-handed 310
Helix 10
AB1
B
42 76Right-handed alpha
Helix 11
AB2
B
85 95Right-handed 310
Helix 12
AB3
B
100 104Right-handed 310
Helix 13
AB4
B
112 134Right-handed alpha
Helix 14
AB5
B
159 191Right-handed alpha
Helix 15
AB6
B
194 205Right-handed alpha
Helix 16
AB7
C
12 17Right-handed 310
Helix 17
AB8
C
42 77Right-handed alpha
Helix 18
AB9
C
85 95Right-handed 310
Helix 19
AC1
C
100 104Right-handed 310
Helix 20
AC2
C
112 134Right-handed alpha
Helix 21
AC3
C
147 151Right-handed 310
Helix 22
AC4
C
158 190Right-handed alpha
Helix 23
AC5
C
193 204Right-handed alpha
Helix 24
AC6
C
212 217Right-handed alpha
Back to top of page
There are no sheets in PDB entry 8HPD
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il