Analysis of interatomic Contacts of Structural Units in PDB entry:
8HPG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HPG entry

There are 2 chains in PDB entry 8HPG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 311
B
 MET 1GLY 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 8HPG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 19Right-handed alpha
Helix 2
AA2
A
29 31Right-handed 310
Helix 3
AA3
A
32 37Right-handed alpha
Helix 4
AA4
A
71 78Right-handed alpha
Helix 5
AA5
A
89 106Right-handed alpha
Helix 6
AA6
A
108 113Right-handed alpha
Helix 7
AA7
A
142 155Right-handed alpha
Helix 8
AA8
A
180 188Right-handed alpha
Helix 9
AA9
A
208 213Right-handed alpha
Helix 10
AB1
A
229 239Right-handed alpha
Helix 11
AB2
A
279 298Right-handed alpha
Helix 12
AB3
B
11 22Right-handed alpha
Helix 13
AB4
B
29 31Right-handed 310
Helix 14
AB5
B
32 37Right-handed alpha
Helix 15
AB6
B
71 78Right-handed alpha
Helix 16
AB7
B
89 106Right-handed alpha
Helix 17
AB8
B
108 113Right-handed alpha
Helix 18
AB9
B
142 155Right-handed alpha
Helix 19
AC1
B
180 188Right-handed alpha
Helix 20
AC2
B
208 213Right-handed alpha
Helix 21
AC3
B
229 239Right-handed alpha
Helix 22
AC4
B
279 291Right-handed alpha
Helix 23
AC5
B
292 298Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8HPG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
3 7parallel
Strand 3
A
41 44parallel
Strand 4
A
59 61parallel
Strand 5
A
81 83parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 177first strand
Strand 2
A
160 163parallel
Strand 3
A
136 139parallel
Strand 4
A
190 193parallel
Strand 5
A
218 221parallel
Strand 6
A
245 247parallel
Strand 7
A
267 268parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 27first strand
Strand 2
B
3 6parallel
Strand 3
B
41 43parallel
Strand 4
B
59 61parallel
Strand 5
B
81 83parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 176first strand
Strand 2
B
160 162parallel
Strand 3
B
136 139parallel
Strand 4
B
190 193parallel
Strand 5
B
218 221parallel
Strand 6
B
245 247parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il