Analysis of interatomic Contacts of Structural Units in PDB entry:
8HPJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HPJ entry

There are 6 chains in PDB entry 8HPJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 11	LEU 410
B	LEU 1	ALA 123
C	GLU 1	THR 110
D	LEU 12	PRO 412
E	LEU 1	SER 121
F	GLU 1	THR 110

There are 40 helices in PDB entry 8HPJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	36	Right-handed alpha
Helix 2	AA2	A	36	48	Right-handed alpha
Helix 3	AA3	A	50	65	Right-handed alpha
Helix 4	AA4	A	65	81	Right-handed alpha
Helix 5	AA5	A	82	98	Right-handed alpha
Helix 6	AA6	A	99	102	Right-handed 310
Helix 7	AA7	A	105	135	Right-handed alpha
Helix 8	AA8	A	138	152	Right-handed alpha
Helix 9	AA9	A	157	169	Right-handed alpha
Helix 10	AB1	A	169	190	Right-handed alpha
Helix 11	AB2	A	212	217	Right-handed alpha
Helix 12	AB3	A	219	251	Right-handed alpha
Helix 13	AB4	A	253	282	Right-handed alpha
Helix 14	AB5	A	283	307	Right-handed alpha
Helix 15	AB6	A	309	326	Right-handed alpha
Helix 16	AB7	A	326	339	Right-handed alpha
Helix 17	AB8	A	343	359	Right-handed alpha
Helix 18	AB9	A	364	374	Right-handed alpha
Helix 19	AC1	A	374	395	Right-handed alpha
Helix 20	AC2	A	396	401	Right-handed alpha
Helix 21	AC3	B	87	91	Right-handed 310
Helix 22	AC4	D	15	36	Right-handed alpha
Helix 23	AC5	D	36	48	Right-handed alpha
Helix 24	AC6	D	50	65	Right-handed alpha
Helix 25	AC7	D	65	81	Right-handed alpha
Helix 26	AC8	D	82	98	Right-handed alpha
Helix 27	AC9	D	105	135	Right-handed alpha
Helix 28	AD1	D	138	153	Right-handed alpha
Helix 29	AD2	D	157	169	Right-handed alpha
Helix 30	AD3	D	169	190	Right-handed alpha
Helix 31	AD4	D	212	217	Right-handed alpha
Helix 32	AD5	D	219	251	Right-handed alpha
Helix 33	AD6	D	253	282	Right-handed alpha
Helix 34	AD7	D	283	307	Right-handed alpha
Helix 35	AD8	D	309	326	Right-handed alpha
Helix 36	AD9	D	326	339	Right-handed alpha
Helix 37	AE1	D	343	359	Right-handed alpha
Helix 38	AE2	D	364	395	Right-handed alpha
Helix 39	AE3	D	396	401	Right-handed alpha
Helix 40	AE4	E	87	91	Right-handed 310

There are 12 sheets in PDB entry 8HPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	19	26	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	69	73	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	46	52	anti-parallel
Strand 3	B	33	40	anti-parallel
Strand 4	B	92	101	anti-parallel
Strand 5	B	111	112	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	46	52	anti-parallel
Strand 3	B	33	40	anti-parallel
Strand 4	B	92	101	anti-parallel
Strand 5	B	116	118	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	7	first strand
Strand 2	C	21	27	anti-parallel
Strand 3	C	72	77	anti-parallel
Strand 4	C	64	69	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	15	first strand
Strand 2	C	104	108	parallel
Strand 3	C	87	92	anti-parallel
Strand 4	C	35	40	anti-parallel
Strand 5	C	47	51	anti-parallel
Strand 6	C	55	56	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	15	first strand
Strand 2	C	104	108	parallel
Strand 3	C	87	92	anti-parallel
Strand 4	C	99	100	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	8	first strand
Strand 2	E	19	26	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	69	73	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	59	first strand
Strand 2	E	46	52	anti-parallel
Strand 3	E	33	40	anti-parallel
Strand 4	E	92	101	anti-parallel
Strand 5	E	111	112	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	59	first strand
Strand 2	E	46	52	anti-parallel
Strand 3	E	33	40	anti-parallel
Strand 4	E	92	101	anti-parallel
Strand 5	E	116	118	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	8	first strand
Strand 2	F	20	27	anti-parallel
Strand 3	F	72	78	anti-parallel
Strand 4	F	64	69	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	15	first strand
Strand 2	F	104	108	parallel
Strand 3	F	87	92	anti-parallel
Strand 4	F	35	40	anti-parallel
Strand 5	F	46	51	anti-parallel
Strand 6	F	55	56	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	15	first strand
Strand 2	F	104	108	parallel
Strand 3	F	87	92	anti-parallel
Strand 4	F	99	100	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HPJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HPJ