Analysis of interatomic Contacts of Structural Units in PDB entry:
8HPL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HPL entry

There are 5 chains in PDB entry 8HPL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 17	PRO 298
B	ALA 7	VAL 276
C	ALA 2	ASP 391
D	ALA 2	ASP 391
E	GLY 29	PRO 465

There are 77 helices in PDB entry 8HPL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	50	Right-handed alpha
Helix 2	AA2	A	68	76	Right-handed alpha
Helix 3	AA3	A	76	111	Right-handed alpha
Helix 4	AA4	A	114	128	Right-handed alpha
Helix 5	AA5	A	129	140	Right-handed alpha
Helix 6	AA6	A	148	152	Right-handed 310
Helix 7	AA7	A	162	192	Right-handed alpha
Helix 8	AA8	A	193	201	Right-handed alpha
Helix 9	AA9	A	206	236	Right-handed alpha
Helix 10	AB1	A	238	243	Right-handed alpha
Helix 11	AB2	A	253	264	Right-handed alpha
Helix 12	AB3	A	267	292	Right-handed alpha
Helix 13	AB4	B	8	35	Right-handed alpha
Helix 14	AB5	B	54	63	Right-handed alpha
Helix 15	AB6	B	63	93	Right-handed alpha
Helix 16	AB7	B	102	107	Right-handed alpha
Helix 17	AB8	B	107	115	Right-handed alpha
Helix 18	AB9	B	117	132	Right-handed alpha
Helix 19	AC1	B	137	164	Right-handed alpha
Helix 20	AC2	B	166	175	Right-handed alpha
Helix 21	AC3	B	178	208	Right-handed alpha
Helix 22	AC4	B	224	231	Right-handed alpha
Helix 23	AC5	B	242	273	Right-handed alpha
Helix 24	AC6	C	46	55	Right-handed alpha
Helix 25	AC7	C	71	75	Right-handed 310
Helix 26	AC8	C	77	81	Right-handed 310
Helix 27	AC9	C	96	108	Right-handed alpha
Helix 28	AD1	C	111	126	Right-handed alpha
Helix 29	AD2	C	127	132	Right-handed 310
Helix 30	AD3	C	135	139	Right-handed 310
Helix 31	AD4	C	140	154	Right-handed alpha
Helix 32	AD5	C	165	169	Right-handed 310
Helix 33	AD6	C	170	189	Right-handed alpha
Helix 34	AD7	C	198	205	Right-handed alpha
Helix 35	AD8	C	222	227	Right-handed alpha
Helix 36	AD9	C	232	238	Right-handed alpha
Helix 37	AE1	C	266	275	Right-handed alpha
Helix 38	AE2	C	287	289	Right-handed 310
Helix 39	AE3	C	299	305	Right-handed 310
Helix 40	AE4	C	335	345	Right-handed alpha
Helix 41	AE5	C	374	377	Right-handed 310
Helix 42	AE6	D	46	55	Right-handed alpha
Helix 43	AE7	D	77	80	Right-handed 310
Helix 44	AE8	D	96	108	Right-handed alpha
Helix 45	AE9	D	111	126	Right-handed alpha
Helix 46	AF1	D	128	132	Right-handed 310
Helix 47	AF2	D	135	139	Right-handed 310
Helix 48	AF3	D	140	154	Right-handed alpha
Helix 49	AF4	D	170	189	Right-handed alpha
Helix 50	AF5	D	198	205	Right-handed alpha
Helix 51	AF6	D	222	229	Right-handed alpha
Helix 52	AF7	D	232	239	Right-handed alpha
Helix 53	AF8	D	266	275	Right-handed alpha
Helix 54	AF9	D	299	305	Right-handed 310
Helix 55	AG1	D	335	342	Right-handed alpha
Helix 56	AG2	D	343	345	Right-handed 310
Helix 57	AG3	D	374	377	Right-handed 310
Helix 58	AG4	E	40	55	Right-handed alpha
Helix 59	AG5	E	69	83	Right-handed alpha
Helix 60	AG6	E	97	104	Right-handed alpha
Helix 61	AG7	E	117	124	Right-handed alpha
Helix 62	AG8	E	127	134	Right-handed alpha
Helix 63	AG9	E	165	180	Right-handed alpha
Helix 64	AH1	E	192	206	Right-handed alpha
Helix 65	AH2	E	223	241	Right-handed alpha
Helix 66	AH3	E	249	253	Right-handed 310
Helix 67	AH4	E	254	264	Right-handed alpha
Helix 68	AH5	E	275	287	Right-handed alpha
Helix 69	AH6	E	293	297	Right-handed 310
Helix 70	AH7	E	313	326	Right-handed alpha
Helix 71	AH8	E	359	371	Right-handed alpha
Helix 72	AH9	E	372	381	Right-handed alpha
Helix 73	AI1	E	389	394	Right-handed 310
Helix 74	AI2	E	395	402	Right-handed alpha
Helix 75	AI3	E	404	414	Right-handed alpha
Helix 76	AI4	E	423	436	Right-handed alpha
Helix 77	AI5	E	442	459	Right-handed alpha

There are 13 sheets in PDB entry 8HPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	11	first strand
Strand 2	C	24	31	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	159	163	parallel
Strand 3	C	191	196	parallel
Strand 4	C	36	40	parallel
Strand 5	C	209	213	parallel
Strand 6	C	216	221	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	250	first strand
Strand 2	C	281	286	anti-parallel
Strand 3	C	380	381	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	292	first strand
Strand 2	C	367	372	anti-parallel
Strand 3	C	308	311	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	316	first strand
Strand 2	C	323	327	anti-parallel
Strand 3	C	351	354	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	31	first strand
Strand 2	D	4	10	anti-parallel
Strand 3	D	62	66	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	83	first strand
Strand 2	D	159	163	parallel
Strand 3	D	192	196	parallel
Strand 4	D	36	40	parallel
Strand 5	D	208	213	parallel
Strand 6	D	216	221	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	264	first strand
Strand 2	D	255	257	anti-parallel
Strand 3	D	245	252	anti-parallel
Strand 4	D	281	286	anti-parallel
Strand 5	D	379	381	anti-parallel
Strand 6	D	386	387	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	292	first strand
Strand 2	D	367	372	anti-parallel
Strand 3	D	308	311	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	314	316	first strand
Strand 2	D	321	327	anti-parallel
Strand 3	D	351	357	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	66	first strand
Strand 2	E	31	37	parallel
Strand 3	E	90	94	parallel
Strand 4	E	347	353	anti-parallel
Strand 5	E	143	148	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	136	first strand
Strand 2	E	139	140	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	186	first strand
Strand 2	E	267	272	parallel
Strand 3	E	151	155	anti-parallel
Strand 4	E	328	329	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HPL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HPL