Analysis of interatomic Contacts of Structural Units in PDB entry:
8HPM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HPM entry

There are 5 chains in PDB entry 8HPM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 17	PRO 298
B	ASP 6	VAL 276
C	ALA 2	ASP 391
D	ALA 2	ASP 391
E	GLY 29	PRO 465

There are 73 helices in PDB entry 8HPM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	29	Right-handed alpha
Helix 2	AA2	A	29	34	Right-handed alpha
Helix 3	AA3	A	39	51	Right-handed alpha
Helix 4	AA4	A	67	76	Right-handed alpha
Helix 5	AA5	A	76	111	Right-handed alpha
Helix 6	AA6	A	115	128	Right-handed alpha
Helix 7	AA7	A	129	141	Right-handed alpha
Helix 8	AA8	A	148	152	Right-handed 310
Helix 9	AA9	A	161	190	Right-handed alpha
Helix 10	AB1	A	193	203	Right-handed alpha
Helix 11	AB2	A	205	213	Right-handed alpha
Helix 12	AB3	A	215	236	Right-handed alpha
Helix 13	AB4	A	238	246	Right-handed alpha
Helix 14	AB5	A	253	264	Right-handed alpha
Helix 15	AB6	A	267	291	Right-handed alpha
Helix 16	AB7	B	7	37	Right-handed alpha
Helix 17	AB8	B	54	62	Right-handed alpha
Helix 18	AB9	B	64	98	Right-handed alpha
Helix 19	AC1	B	102	114	Right-handed alpha
Helix 20	AC2	B	117	127	Right-handed alpha
Helix 21	AC3	B	138	164	Right-handed alpha
Helix 22	AC4	B	166	173	Right-handed alpha
Helix 23	AC5	B	178	206	Right-handed alpha
Helix 24	AC6	B	209	216	Right-handed alpha
Helix 25	AC7	B	224	232	Right-handed alpha
Helix 26	AC8	B	241	263	Right-handed alpha
Helix 27	AC9	B	263	272	Right-handed alpha
Helix 28	AD1	C	46	55	Right-handed alpha
Helix 29	AD2	C	96	108	Right-handed alpha
Helix 30	AD3	C	111	126	Right-handed alpha
Helix 31	AD4	C	140	154	Right-handed alpha
Helix 32	AD5	C	170	189	Right-handed alpha
Helix 33	AD6	C	198	204	Right-handed alpha
Helix 34	AD7	C	222	229	Right-handed alpha
Helix 35	AD8	C	232	239	Right-handed alpha
Helix 36	AD9	C	266	275	Right-handed alpha
Helix 37	AE1	C	287	291	Right-handed 310
Helix 38	AE2	C	300	305	Right-handed alpha
Helix 39	AE3	C	338	343	Right-handed alpha
Helix 40	AE4	D	46	55	Right-handed alpha
Helix 41	AE5	D	73	75	Right-handed 310
Helix 42	AE6	D	96	108	Right-handed alpha
Helix 43	AE7	D	111	126	Right-handed alpha
Helix 44	AE8	D	140	154	Right-handed alpha
Helix 45	AE9	D	165	169	Right-handed 310
Helix 46	AF1	D	173	189	Right-handed alpha
Helix 47	AF2	D	198	204	Right-handed alpha
Helix 48	AF3	D	222	229	Right-handed alpha
Helix 49	AF4	D	232	239	Right-handed alpha
Helix 50	AF5	D	266	274	Right-handed alpha
Helix 51	AF6	D	301	305	Right-handed 310
Helix 52	AF7	D	338	343	Right-handed alpha
Helix 53	AF8	D	374	377	Right-handed 310
Helix 54	AF9	E	40	55	Right-handed alpha
Helix 55	AG1	E	71	83	Right-handed alpha
Helix 56	AG2	E	97	105	Right-handed alpha
Helix 57	AG3	E	109	113	Right-handed 310
Helix 58	AG4	E	116	125	Right-handed alpha
Helix 59	AG5	E	127	134	Right-handed alpha
Helix 60	AG6	E	165	180	Right-handed alpha
Helix 61	AG7	E	192	206	Right-handed alpha
Helix 62	AG8	E	223	243	Right-handed alpha
Helix 63	AG9	E	254	264	Right-handed alpha
Helix 64	AH1	E	275	286	Right-handed alpha
Helix 65	AH2	E	293	301	Right-handed 310
Helix 66	AH3	E	313	325	Right-handed alpha
Helix 67	AH4	E	360	371	Right-handed alpha
Helix 68	AH5	E	374	382	Right-handed alpha
Helix 69	AH6	E	389	394	Right-handed 310
Helix 70	AH7	E	395	402	Right-handed alpha
Helix 71	AH8	E	404	412	Right-handed alpha
Helix 72	AH9	E	423	435	Right-handed alpha
Helix 73	AI1	E	442	459	Right-handed alpha

There are 15 sheets in PDB entry 8HPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	63	64	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	31	first strand
Strand 2	C	4	9	anti-parallel
Strand 3	C	64	66	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	161	first strand
Strand 2	C	191	196	parallel
Strand 3	C	36	40	parallel
Strand 4	C	208	212	parallel
Strand 5	C	217	221	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	250	first strand
Strand 2	C	281	286	anti-parallel
Strand 3	C	378	381	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	293	first strand
Strand 2	C	366	371	anti-parallel
Strand 3	C	308	312	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	316	first strand
Strand 2	C	321	327	anti-parallel
Strand 3	C	351	357	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	65	67	anti-parallel
Strand 3	D	70	71	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	196	first strand
Strand 2	D	36	40	parallel
Strand 3	D	208	213	parallel
Strand 4	D	216	221	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	84	first strand
Strand 2	D	160	161	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	249	first strand
Strand 2	D	282	286	anti-parallel
Strand 3	D	378	381	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	258	first strand
Strand 2	D	261	263	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	293	first strand
Strand 2	D	366	372	anti-parallel
Strand 3	D	308	312	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	315	316	first strand
Strand 2	D	322	327	anti-parallel
Strand 3	D	351	356	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	66	first strand
Strand 2	E	31	37	parallel
Strand 3	E	90	94	parallel
Strand 4	E	347	353	anti-parallel
Strand 5	E	143	148	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	269	270	first strand
Strand 2	E	152	155	anti-parallel
Strand 3	E	328	331	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HPM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HPM