Analysis of interatomic Contacts of Structural Units in PDB entry:
8HPN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HPN entry

There are 5 chains in PDB entry 8HPN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 17	SER 300
B	ASP 6	GLY 270
C	ALA 2	ASP 391
D	ALA 2	ASP 391
E	ILE 30	PRO 465

There are 78 helices in PDB entry 8HPN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	38	Right-handed alpha
Helix 2	AA2	A	39	52	Right-handed alpha
Helix 3	AA3	A	67	76	Right-handed alpha
Helix 4	AA4	A	76	111	Right-handed alpha
Helix 5	AA5	A	114	128	Right-handed alpha
Helix 6	AA6	A	129	141	Right-handed alpha
Helix 7	AA7	A	146	151	Right-handed alpha
Helix 8	AA8	A	157	160	Right-handed 310
Helix 9	AA9	A	161	191	Right-handed alpha
Helix 10	AB1	A	193	202	Right-handed alpha
Helix 11	AB2	A	206	219	Right-handed alpha
Helix 12	AB3	A	224	236	Right-handed alpha
Helix 13	AB4	A	239	246	Right-handed alpha
Helix 14	AB5	A	253	264	Right-handed alpha
Helix 15	AB6	A	267	292	Right-handed alpha
Helix 16	AB7	B	7	37	Right-handed alpha
Helix 17	AB8	B	38	42	Right-handed 310
Helix 18	AB9	B	54	62	Right-handed alpha
Helix 19	AC1	B	64	97	Right-handed alpha
Helix 20	AC2	B	102	114	Right-handed alpha
Helix 21	AC3	B	117	128	Right-handed alpha
Helix 22	AC4	B	137	163	Right-handed alpha
Helix 23	AC5	B	166	176	Right-handed alpha
Helix 24	AC6	B	180	208	Right-handed alpha
Helix 25	AC7	B	210	216	Right-handed alpha
Helix 26	AC8	B	224	232	Right-handed alpha
Helix 27	AC9	B	241	263	Right-handed alpha
Helix 28	AD1	B	263	270	Right-handed alpha
Helix 29	AD2	C	46	55	Right-handed alpha
Helix 30	AD3	C	76	80	Right-handed 310
Helix 31	AD4	C	96	108	Right-handed alpha
Helix 32	AD5	C	111	127	Right-handed alpha
Helix 33	AD6	C	135	139	Right-handed 310
Helix 34	AD7	C	140	156	Right-handed alpha
Helix 35	AD8	C	165	169	Right-handed 310
Helix 36	AD9	C	170	188	Right-handed alpha
Helix 37	AE1	C	198	206	Right-handed alpha
Helix 38	AE2	C	222	229	Right-handed alpha
Helix 39	AE3	C	232	239	Right-handed alpha
Helix 40	AE4	C	266	276	Right-handed alpha
Helix 41	AE5	C	298	305	Right-handed alpha
Helix 42	AE6	D	46	55	Right-handed alpha
Helix 43	AE7	D	76	81	Right-handed alpha
Helix 44	AE8	D	96	108	Right-handed alpha
Helix 45	AE9	D	111	125	Right-handed alpha
Helix 46	AF1	D	135	139	Right-handed 310
Helix 47	AF2	D	140	154	Right-handed alpha
Helix 48	AF3	D	165	169	Right-handed 310
Helix 49	AF4	D	170	189	Right-handed alpha
Helix 50	AF5	D	198	206	Right-handed alpha
Helix 51	AF6	D	222	229	Right-handed alpha
Helix 52	AF7	D	232	239	Right-handed alpha
Helix 53	AF8	D	266	276	Right-handed alpha
Helix 54	AF9	D	287	291	Right-handed 310
Helix 55	AG1	D	295	297	Right-handed 310
Helix 56	AG2	D	298	304	Right-handed alpha
Helix 57	AG3	E	40	56	Right-handed alpha
Helix 58	AG4	E	69	83	Right-handed alpha
Helix 59	AG5	E	98	105	Right-handed alpha
Helix 60	AG6	E	109	113	Right-handed 310
Helix 61	AG7	E	116	121	Right-handed 310
Helix 62	AG8	E	127	135	Right-handed alpha
Helix 63	AG9	E	165	180	Right-handed alpha
Helix 64	AH1	E	192	206	Right-handed alpha
Helix 65	AH2	E	223	243	Right-handed alpha
Helix 66	AH3	E	254	264	Right-handed alpha
Helix 67	AH4	E	275	287	Right-handed alpha
Helix 68	AH5	E	297	301	Right-handed 310
Helix 69	AH6	E	305	309	Right-handed 310
Helix 70	AH7	E	313	327	Right-handed alpha
Helix 71	AH8	E	360	372	Right-handed alpha
Helix 72	AH9	E	372	382	Right-handed alpha
Helix 73	AI1	E	389	394	Right-handed 310
Helix 74	AI2	E	395	402	Right-handed alpha
Helix 75	AI3	E	404	413	Right-handed alpha
Helix 76	AI4	E	423	436	Right-handed alpha
Helix 77	AI5	E	437	441	Right-handed 310
Helix 78	AI6	E	442	460	Right-handed alpha

There are 13 sheets in PDB entry 8HPN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	31	first strand
Strand 2	C	4	13	anti-parallel
Strand 3	C	62	67	anti-parallel
Strand 4	C	70	71	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	85	first strand
Strand 2	C	159	163	parallel
Strand 3	C	191	195	parallel
Strand 4	C	36	40	parallel
Strand 5	C	208	213	parallel
Strand 6	C	216	221	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	264	first strand
Strand 2	C	255	258	anti-parallel
Strand 3	C	245	252	anti-parallel
Strand 4	C	281	286	anti-parallel
Strand 5	C	377	381	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	293	first strand
Strand 2	C	366	372	anti-parallel
Strand 3	C	306	312	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	317	first strand
Strand 2	C	321	325	anti-parallel
Strand 3	C	354	357	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	24	first strand
Strand 2	D	4	13	anti-parallel
Strand 3	D	29	31	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	24	first strand
Strand 2	D	4	13	anti-parallel
Strand 3	D	62	67	anti-parallel
Strand 4	D	70	71	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	85	first strand
Strand 2	D	159	163	parallel
Strand 3	D	191	196	parallel
Strand 4	D	36	40	parallel
Strand 5	D	208	213	parallel
Strand 6	D	216	221	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	264	first strand
Strand 2	D	255	258	anti-parallel
Strand 3	D	245	251	anti-parallel
Strand 4	D	282	286	anti-parallel
Strand 5	D	378	381	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	292	293	first strand
Strand 2	D	369	373	anti-parallel
Strand 3	D	305	309	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	314	317	first strand
Strand 2	D	321	325	anti-parallel
Strand 3	D	356	357	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	66	first strand
Strand 2	E	31	37	parallel
Strand 3	E	88	93	parallel
Strand 4	E	346	353	anti-parallel
Strand 5	E	143	149	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	269	272	first strand
Strand 2	E	151	155	anti-parallel
Strand 3	E	328	332	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HPN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HPN