Analysis of interatomic Contacts of Structural Units in PDB entry:
8HPO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HPO entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 20 chains in PDB entry 8HPO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	SER 2	LEU 449
D	LYS 14	ILE 308
D	LEU 310	LEU 324
F	VAL 2	ALA 5
F	PRO 7	ILE 11
F	VAL 13	PRO 264
F	ALA 266	ASN 364
F	PRO 366	PRO 387
F	VAL 389	HIS 393
G	VAL 2	ALA 386
I	LEU 72	HIS 173
I	ILE 175	GLY 201
A	ILE 633	GLY 1372
H	SER 171	TRP 403
C	PRO 4	SER 147
E	GLU 22	LEU 166
E	PRO 168	LEU 170
E	LEU 172	ILE 376
B	PRO 643	LEU 1343
J	TYR 62	LEU 276

There are133 helices in PDB entry 8HPO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	2	23	Right-handed alpha
Helix 2	AA2	K	23	27	Right-handed alpha
Helix 3	AA3	K	89	91	Right-handed 310
Helix 4	AA4	K	108	117	Right-handed alpha
Helix 5	AA5	K	308	314	Right-handed alpha
Helix 6	AA6	K	339	342	Right-handed 310
Helix 7	AA7	K	373	381	Right-handed alpha
Helix 8	AA8	K	390	397	Right-handed alpha
Helix 9	AA9	K	403	407	Right-handed 310
Helix 10	AB1	D	15	35	Right-handed alpha
Helix 11	AB2	D	40	55	Right-handed alpha
Helix 12	AB3	D	61	141	Right-handed alpha
Helix 13	AB4	D	300	316	Right-handed alpha
Helix 14	AB5	F	28	32	Right-handed 310
Helix 15	AB6	F	42	55	Right-handed alpha
Helix 16	AB7	F	56	61	Right-handed 310
Helix 17	AB8	F	70	75	Right-handed alpha
Helix 18	AB9	F	79	89	Right-handed alpha
Helix 19	AC1	F	93	96	Right-handed 310
Helix 20	AC2	F	97	104	Right-handed alpha
Helix 21	AC3	F	115	136	Right-handed alpha
Helix 22	AC4	F	164	175	Right-handed alpha
Helix 23	AC5	F	190	197	Right-handed alpha
Helix 24	AC6	F	226	230	Right-handed 310
Helix 25	AC7	F	243	262	Right-handed alpha
Helix 26	AC8	F	287	300	Right-handed alpha
Helix 27	AC9	F	314	330	Right-handed alpha
Helix 28	AD1	F	365	380	Right-handed alpha
Helix 29	AD2	G	28	32	Right-handed 310
Helix 30	AD3	G	42	55	Right-handed alpha
Helix 31	AD4	G	56	59	Right-handed 310
Helix 32	AD5	G	70	75	Right-handed alpha
Helix 33	AD6	G	79	89	Right-handed alpha
Helix 34	AD7	G	94	98	Right-handed 310
Helix 35	AD8	G	99	104	Right-handed alpha
Helix 36	AD9	G	115	136	Right-handed alpha
Helix 37	AE1	G	164	177	Right-handed alpha
Helix 38	AE2	G	190	197	Right-handed alpha
Helix 39	AE3	G	226	230	Right-handed 310
Helix 40	AE4	G	243	262	Right-handed alpha
Helix 41	AE5	G	287	300	Right-handed alpha
Helix 42	AE6	G	314	330	Right-handed alpha
Helix 43	AE7	G	344	348	Right-handed 310
Helix 44	AE8	G	365	380	Right-handed alpha
Helix 45	AE9	I	75	88	Right-handed alpha
Helix 46	AF1	I	110	119	Right-handed alpha
Helix 47	AF2	I	129	134	Right-handed alpha
Helix 48	AF3	I	138	141	Right-handed 310
Helix 49	AF4	I	142	149	Right-handed alpha
Helix 50	AF5	I	159	173	Right-handed alpha
Helix 51	AF6	I	179	189	Right-handed alpha
Helix 52	AF7	A	662	677	Right-handed alpha
Helix 53	AF8	A	678	694	Right-handed alpha
Helix 54	AF9	A	698	711	Right-handed alpha
Helix 55	AG1	A	713	725	Right-handed alpha
Helix 56	AG2	A	760	764	Right-handed 310
Helix 57	AG3	A	772	777	Right-handed alpha
Helix 58	AG4	A	802	839	Right-handed alpha
Helix 59	AG5	A	843	848	Right-handed alpha
Helix 60	AG6	A	861	871	Right-handed alpha
Helix 61	AG7	A	875	886	Right-handed alpha
Helix 62	AG8	A	886	891	Right-handed alpha
Helix 63	AG9	A	894	924	Right-handed alpha
Helix 64	AH1	A	925	928	Right-handed 310
Helix 65	AH2	A	931	942	Right-handed alpha
Helix 66	AH3	A	944	951	Right-handed alpha
Helix 67	AH4	A	982	997	Right-handed alpha
Helix 68	AH5	A	1003	1023	Right-handed alpha
Helix 69	AH6	A	1025	1039	Right-handed alpha
Helix 70	AH7	A	1064	1069	Right-handed alpha
Helix 71	AH8	A	1141	1173	Right-handed alpha
Helix 72	AH9	A	1178	1184	Right-handed alpha
Helix 73	AI1	A	1189	1194	Right-handed alpha
Helix 74	AI2	A	1202	1216	Right-handed alpha
Helix 75	AI3	A	1220	1232	Right-handed alpha
Helix 76	AI4	A	1236	1240	Right-handed 310
Helix 77	AI5	A	1241	1254	Right-handed alpha
Helix 78	AI6	A	1259	1274	Right-handed alpha
Helix 79	AI7	A	1280	1294	Right-handed alpha
Helix 80	AI8	A	1329	1343	Right-handed alpha
Helix 81	AI9	A	1362	1372	Right-handed alpha
Helix 82	AJ1	H	172	216	Right-handed alpha
Helix 83	AJ2	H	230	295	Right-handed alpha
Helix 84	AJ3	H	336	342	Right-handed alpha
Helix 85	AJ4	H	355	380	Right-handed alpha
Helix 86	AJ5	H	393	403	Right-handed alpha
Helix 87	AJ6	C	8	37	Right-handed alpha
Helix 88	AJ7	C	42	55	Right-handed alpha
Helix 89	AJ8	C	64	80	Right-handed alpha
Helix 90	AJ9	C	81	114	Right-handed alpha
Helix 91	AK1	C	131	147	Right-handed alpha
Helix 92	AK2	E	23	37	Right-handed alpha
Helix 93	AK3	E	70	75	Right-handed 310
Helix 94	AK4	E	83	87	Right-handed 310
Helix 95	AK5	E	161	166	Right-handed alpha
Helix 96	AK6	E	173	178	Right-handed alpha
Helix 97	AK7	E	180	184	Right-handed 310
Helix 98	AK8	E	189	218	Right-handed alpha
Helix 99	AK9	E	297	302	Right-handed alpha
Helix 100	AL1	E	318	374	Right-handed alpha
Helix 101	AL2	B	656	660	Right-handed 310
Helix 102	AL3	B	667	677	Right-handed alpha
Helix 103	AL4	B	678	694	Right-handed alpha
Helix 104	AL5	B	698	711	Right-handed alpha
Helix 105	AL6	B	713	724	Right-handed alpha
Helix 106	AL7	B	771	778	Right-handed alpha
Helix 107	AL8	B	801	840	Right-handed alpha
Helix 108	AL9	B	860	872	Right-handed alpha
Helix 109	AM1	B	876	883	Right-handed alpha
Helix 110	AM2	B	892	926	Right-handed alpha
Helix 111	AM3	B	930	939	Right-handed alpha
Helix 112	AM4	B	944	965	Right-handed alpha
Helix 113	AM5	B	982	997	Right-handed alpha
Helix 114	AM6	B	1003	1022	Right-handed alpha
Helix 115	AM7	B	1025	1040	Right-handed alpha
Helix 116	AM8	B	1064	1070	Right-handed alpha
Helix 117	AM9	B	1141	1164	Right-handed alpha
Helix 118	AN1	B	1164	1175	Right-handed alpha
Helix 119	AN2	B	1189	1195	Right-handed alpha
Helix 120	AN3	B	1202	1217	Right-handed alpha
Helix 121	AN4	B	1220	1232	Right-handed alpha
Helix 122	AN5	B	1233	1240	Right-handed 310
Helix 123	AN6	B	1241	1247	Right-handed alpha
Helix 124	AN7	B	1248	1257	Right-handed alpha
Helix 125	AN8	B	1259	1274	Right-handed alpha
Helix 126	AN9	B	1279	1292	Right-handed alpha
Helix 127	AO1	B	1330	1343	Right-handed alpha
Helix 128	AO2	J	69	80	Right-handed alpha
Helix 129	AO3	J	104	108	Right-handed 310
Helix 130	AO4	J	131	135	Right-handed 310
Helix 131	AO5	J	144	153	Right-handed alpha
Helix 132	AO6	J	157	162	Right-handed alpha
Helix 133	AO7	J	176	184	Right-handed alpha

There are 20 sheets in PDB entry 8HPO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	28	34	first strand
Strand 2	K	438	443	anti-parallel
Strand 3	K	429	432	anti-parallel
Strand 4	K	419	421	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	50	54	first strand
Strand 2	K	66	75	anti-parallel
Strand 3	K	59	61	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	50	54	first strand
Strand 2	K	66	75	anti-parallel
Strand 3	K	78	87	anti-parallel
Strand 4	K	123	124	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	130	134	first strand
Strand 2	K	143	149	anti-parallel
Strand 3	K	154	158	anti-parallel
Strand 4	K	166	168	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	190	192	first strand
Strand 2	K	198	203	anti-parallel
Strand 3	K	212	218	anti-parallel
Strand 4	K	226	232	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	238	243	first strand
Strand 2	K	249	253	anti-parallel
Strand 3	K	257	260	anti-parallel
Strand 4	K	271	274	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	281	286	first strand
Strand 2	K	293	298	anti-parallel
Strand 3	K	302	307	anti-parallel
Strand 4	K	334	337	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	346	349	first strand
Strand 2	K	356	360	anti-parallel
Strand 3	K	366	370	anti-parallel
Strand 4	K	398	402	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	62	64	first strand
Strand 2	F	21	24	parallel
Strand 3	F	141	144	parallel
Strand 4	F	305	308	parallel
Strand 5	F	267	270	parallel
Strand 6	F	180	184	parallel
Strand 7	F	203	210	parallel
Strand 8	F	233	238	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	64	first strand
Strand 2	G	21	24	parallel
Strand 3	G	141	144	parallel
Strand 4	G	305	308	parallel
Strand 5	G	266	270	parallel
Strand 6	G	180	184	parallel
Strand 7	G	203	210	parallel
Strand 8	G	233	238	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	126	127	first strand
Strand 2	I	157	158	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	750	751	first strand
Strand 2	A	755	757	anti-parallel
Strand 3	A	782	784	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	975	977	first strand
Strand 2	A	1311	1317	anti-parallel
Strand 3	A	1300	1306	anti-parallel
Strand 4	A	1135	1140	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	93	first strand
Strand 2	E	96	99	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	734	735	first strand
Strand 2	J	67	68	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	755	757	first strand
Strand 2	B	782	784	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	975	977	first strand
Strand 2	B	1311	1317	anti-parallel
Strand 3	B	1300	1306	anti-parallel
Strand 4	B	1135	1140	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	86	91	first strand
Strand 2	J	138	143	parallel
Strand 3	J	224	233	anti-parallel
Strand 4	J	264	274	anti-parallel
Strand 5	J	171	172	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	86	91	first strand
Strand 2	J	138	143	parallel
Strand 3	J	224	233	anti-parallel
Strand 4	J	264	274	anti-parallel
Strand 5	J	212	213	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	243	244	first strand
Strand 2	J	247	248	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HPO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HPO